Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J16
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42438-3|AAF99866.1|   94|Caenorhabditis elegans Downstream of m...   109   2e-24
AF016224-3|AAC27123.1|   94|Caenorhabditis elegans cyclin kinase...   109   2e-24
AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical...   106   2e-23
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical...    29   5.7  
AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical...    29   5.7  
Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>U42438-3|AAF99866.1|   94|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 6 protein.
          Length = 94

 Score =  109 bits (263), Expect = 2e-24
 Identities = 45/69 (65%), Positives = 55/69 (79%)
 Frame = +1

Query: 250 SRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQP 429
           + D YYS KY D+E EYRHV + K++ KL+PKN LMSE EWRS+G+QQS GW+HYM H P
Sbjct: 5   NNDFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGP 64

Query: 430 EPHILLFRR 456
           E H+LLFRR
Sbjct: 65  ERHVLLFRR 73


>AF016224-3|AAC27123.1|   94|Caenorhabditis elegans cyclin kinase
           subunit protein.
          Length = 94

 Score =  109 bits (263), Expect = 2e-24
 Identities = 45/69 (65%), Positives = 55/69 (79%)
 Frame = +1

Query: 250 SRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQP 429
           + D YYS KY D+E EYRHV + K++ KL+PKN LMSE EWRS+G+QQS GW+HYM H P
Sbjct: 5   NNDFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGP 64

Query: 430 EPHILLFRR 456
           E H+LLFRR
Sbjct: 65  ERHVLLFRR 73


>AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical
           protein Y71G12B.27 protein.
          Length = 118

 Score =  106 bits (254), Expect = 2e-23
 Identities = 44/68 (64%), Positives = 53/68 (77%)
 Frame = +1

Query: 256 DIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEP 435
           DIYYS +Y D+E+EYRHV+LP+ + + VPK  L+SE EWR  GVQQS GW HYM H PE 
Sbjct: 3   DIYYSPRYEDDEYEYRHVILPQAVSRKVPKGRLLSEAEWRRAGVQQSLGWEHYMVHNPEK 62

Query: 436 HILLFRRR 459
           HILLFRR+
Sbjct: 63  HILLFRRK 70


>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
            W09D10.2 protein.
          Length = 1335

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/87 (24%), Positives = 40/87 (45%)
 Frame = -1

Query: 531  YTFYS*MMGQKTHFISIFFWWCCYPPSE**NMWFWLMCHIVHPTLTLLHTDAAPLLF*H* 352
            Y+F+  M+      + +FF   CY      N+  W   H++   L +++T    L     
Sbjct: 1143 YSFWINMLDAVWQSLVVFF--ICYFTYRGSNVDMWTFGHLLVTQLIIVNTFHLALF---- 1196

Query: 351  MVFWH*LYHLFW*YYMSVFMFFVIIFL 271
            + +W   + +FW  ++SV +FF+   L
Sbjct: 1197 VQYW--TWPMFWSMFLSVLLFFICALL 1221


>AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical
           protein C18E3.9b protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 340 PKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPHILLFRRRITTPPEK 480
           P+N  M E    S+  Q  Q W+ +     + ++LL R ++  P EK
Sbjct: 40  PENRAMQESIINSVSEQTLQSWIDFREEINKKNLLL-RNKLKIPSEK 85


>AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical
           protein C18E3.9a protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 340 PKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPHILLFRRRITTPPEK 480
           P+N  M E    S+  Q  Q W+ +     + ++LL R ++  P EK
Sbjct: 40  PENRAMQESIINSVSEQTLQSWIDFREEINKKNLLL-RNKLKIPSEK 85


>Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical
           protein F21H7.7 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 312 YYMSVFMFFVIIFLGIINVSRHDVTQQISTLKIFP 208
           YY  VF+ F++I + ++N+ +     ++  LK +P
Sbjct: 154 YYFFVFLPFILIVIFLLNIPQDQDAAKLDALKKYP 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,943,676
Number of Sequences: 27780
Number of extensions: 396660
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)