Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_J12
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 52 6e-07
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 50 2e-06
06_02_0213 + 13087707-13088423 31 0.91
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965... 31 0.91
01_01_0817 + 6364063-6364324,6364422-6364637,6364742-6365272,636... 31 1.6
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 30 2.8
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 29 6.4
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437... 29 6.4
05_04_0422 + 21122099-21122194,21122353-21122510,21122651-211228... 28 8.5
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 28 8.5
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 52.0 bits (119), Expect = 6e-07
Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 29/257 (11%)
Frame = +3
Query: 159 CTDVLWLVIYIVFWILMLIVACISFIYGNPQRLINGFDSFGNTCGVKSNKQLMNNSLSGI 338
C D+ +LV++ FW+ M++ + F GNP RL D GN CG + + + L
Sbjct: 43 CRDLAFLVLFAAFWVAMIVNSSFGFNQGNPLRLTYELDYKGNICGSRHGDPDL-HELDVR 101
Query: 339 NTLDKKYLFFMDVKE----LRKSLKICVKECPNKKIESLDDIKQF----YRQTGSNLCN- 491
++ ++ VK+ L + IC+ ECP + L+ + + R + + N
Sbjct: 102 YWMNPNQVYQSGVKDNKINLADAKAICLMECPIPAADGLNFVCDYPEGDIRLSIDDWINR 161
Query: 492 -YPVNVNTLPNSAELH-NYYGPC-----PTLPVYESFPLLNRCFPKKAQ----------D 620
Y P+ GPC P++ VY S + R + D
Sbjct: 162 DYDYFEFLAPDMRNSSLQLQGPCYPVIFPSVNVYWSCQFIARASNVSLKHWQQMGGINID 221
Query: 621 IATKVFKDFYELLNSWDTI-EQMLSDLYSSWKEMIIC--IIVAFLCSLLMVSILHLLATF 791
+ K ++ +NS ++ ++ ++D+ SW +I+C ++ FL + ++ I + +A
Sbjct: 222 ENILIDKTIHKAINSKSSVLKRYVADIGKSWPVLIVCGGLLPLFLSVIWLLLIRYFVAA- 280
Query: 792 VSWIFMIIVSIVSVAGT 842
+ WI +++ + + ++ T
Sbjct: 281 MPWITVVLFNALVISVT 297
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 50.4 bits (115), Expect = 2e-06
Identities = 55/258 (21%), Positives = 111/258 (43%), Gaps = 30/258 (11%)
Frame = +3
Query: 159 CTDVLWLVIYIVFWILMLIVACISFIYGNPQRLINGFDSFGNTCGVKSNKQLMNNSLSGI 338
C D+ +LV++ FW+ M++ + F GNP RL D GN CG + + + L
Sbjct: 43 CRDLAFLVLFAAFWVAMIVNSSFGFNQGNPLRLTYELDYKGNICGSRHGDPDL-HELDVR 101
Query: 339 NTLDKKYLFFMDVKE----LRKSLKICVKECPNKKIESLD--------DIKQFYRQTGSN 482
++ ++ VK+ L + IC+ ECP + L+ DI+
Sbjct: 102 YWMNPNQVYQSGVKDNKINLADAKAICLMECPMPAADGLNFVCDYPEGDIRLSVDDWIDR 161
Query: 483 LCNYPVNVNTLPNSAELHNYYGPC-----PTLPVYESFPLLNRCFPKKAQ---------- 617
+Y + ++ L GPC P++ VY S + R +
Sbjct: 162 DYDYFEFLTPDMRNSSL-QLQGPCYPVIFPSVNVYWSCQFIARASNVSLKHWQQMGGINI 220
Query: 618 DIATKVFKDFYELLNSWDTI-EQMLSDLYSSWKEMIIC--IIVAFLCSLLMVSILHLLAT 788
D + K ++ +NS ++ ++ ++D+ SW +I+C ++ FL S++ + ++
Sbjct: 221 DENILIDKTIHKAINSKSSVLKRYVADIGKSWPVLIVCGGLLPLFL-SVIWLLLIRYFVV 279
Query: 789 FVSWIFMIIVSIVSVAGT 842
WI +++ + + ++ T
Sbjct: 280 ATPWITVVVFNALVISVT 297
>06_02_0213 + 13087707-13088423
Length = 238
Score = 31.5 bits (68), Expect = 0.91
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 336 INTLDKKYLFFMDVKELRKSLKICVKECPNKK-IESLDDIKQFYRQTGSNLCNYPVNVNT 512
IN L + Y F ++ ++ CV PN++ + S +D+K S+ + ++++
Sbjct: 165 INQLFQNYAMFSNMMRVQH----CVTALPNQQFLPSSEDVKPMIHHVPSSSYGWNTSIDS 220
Query: 513 LPNSAELH 536
PNS++ H
Sbjct: 221 KPNSSDAH 228
>01_06_0205 -
27495030-27495128,27495397-27496265,27496352-27496511,
27497136-27497208,27497311-27497430,27498454-27498618,
27498695-27498785,27499381-27499465,27499555-27499740,
27499843-27499899,27499998-27500282
Length = 729
Score = 31.5 bits (68), Expect = 0.91
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -3
Query: 159 SLSWVSHEVLIEVIFHFEYNPFYSQN 82
SLS V+H V ++ IFH YNP SQ+
Sbjct: 269 SLSEVAHAVAVKSIFHIYYNPRLSQS 294
>01_01_0817 +
6364063-6364324,6364422-6364637,6364742-6365272,
6365617-6365681
Length = 357
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 192 VFWILMLIVACISFIYGNPQR--LINGFDSFGNT 287
V ++L+L++AC+ + NP R L+ SFGN+
Sbjct: 7 VAFVLLLLLACLHYAQANPSRRPLVQSIFSFGNS 40
>12_02_0803 + 23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 492 YPVNVNTLPNSAELHNYYGPCPTLPVYESFPLLNRCFPKKAQDI 623
YP+ + L SA LH YG CP L ++ LL +PK+ Q I
Sbjct: 1250 YPMCPHILVFSARLHRKYGSCPGLKGFDEL-LLG--WPKEVQGI 1290
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 426 KKIESLDDIKQFYRQTGSNLCNYPVNVNTLPNSAELHNYY-GPCPTLPVYESFPLLNRCF 602
+ + L I+ F L P + + N+ L N Y CP L V E PLLN +
Sbjct: 961 ESVRQLVSIENFPSLVNLQLIENP-KLERVTNNPSLKNIYIWECPALKVLEELPLLNSIY 1019
>01_06_0705 +
31342236-31342415,31343086-31343391,31343555-31343796,
31343927-31344122,31344419-31344602,31344984-31345147,
31345454-31345981,31346530-31346630,31347619-31347634,
31347834-31347941,31348028-31348078,31349059-31349100,
31349442-31349541,31350039-31350256,31350367-31350807,
31350916-31351043,31351131-31351992
Length = 1288
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +3
Query: 546 GPCPTLPVYESFPLLNRCFPKKAQDIATKV----FKDFYELLNSWDTIEQMLSDL 698
GP PV SFP + CF +KA + T V F + SW E L
Sbjct: 149 GPPTDEPVVCSFPKMAECFNRKAGLLETTVPLGSFNSLFSFTGSWKNDEAATKSL 203
>05_04_0422 +
21122099-21122194,21122353-21122510,21122651-21122866,
21122965-21123379
Length = 294
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +3
Query: 99 GCTQSEISPQSTPHETPKKGCTDVLWLVIYIVFWILMLIVACISFIYGNPQR 254
GC +S S T C + W+ I F ++ L IS ++G+ R
Sbjct: 60 GCRESRAVVPSATKRTVAVACAAISWIATVIAF-VMFLDTGGISVVHGSSSR 110
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 432 IESLDDIKQFYRQTGSNLCNYPVNVNTLPNSAEL 533
+ +L+ +K YR SNLC+ P + + LP+ ++
Sbjct: 852 VATLNKVKTPYRPVESNLCSLPPSRDRLPSGKQI 885
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,309,347
Number of Sequences: 37544
Number of extensions: 430204
Number of successful extensions: 1086
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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