Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J11
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical pr...    33   0.36 
U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine rece...    29   3.3  
AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    29   5.8  
AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical...    28   7.7  

>L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK1236.7 protein.
          Length = 324

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 741 YEAMKAAFSIXXXXXXXXXXXXXXKLLRDFIGYIKTQK*F-IGRLAAH 881
           Y AMKA+F+I               L+RDF+ Y+KT K   I  L++H
Sbjct: 203 YLAMKASFAIEEEGTDAIEGEEAENLIRDFVDYVKTNKVVNIDELSSH 250


>U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 3 protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 187 EGIAFYYVLNLLCTFNSFNTFSIFVNTFQRSLRDFSICRYLRRS 56
           +G+ FYY     CT   F +FS+    F+R    + +  Y +RS
Sbjct: 87  DGLVFYYASLARCTCYFFVSFSLPCFVFERCCASYFLSDYEKRS 130


>AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.10 protein.
          Length = 69

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +2

Query: 350 CCPKGWRTRSSTSC*ESKGADESECC 427
           CCP GW       C  +   DE  CC
Sbjct: 39  CCPDGWEFGGRAPCPANPNMDEVWCC 64


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 175 FYYVLNLLCTFNSFNTFSIFVNTFQRSLRDFSICRYLRRSNNLNLKEFPY 26
           F+ +LN   +  ++N F+I       S RD++ C +   +N+L +  F Y
Sbjct: 783 FHQLLNDWTSNKAYNVFTIISLRIFSSERDWTTCEFSSDANDLLIDRFRY 832


>AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical
           protein C05C8.8 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
 Frame = -1

Query: 229 YNNYPEKILTL*SIEGIAFYYVLNLLCTFNSFNTFSIFVNTFQRSLRDFSICRYLRRS-- 56
           +NN+ +KI+ L  +  I F + L ++     FN  S+ +N F+ +   FSI  Y  ++  
Sbjct: 2   FNNF-KKIVIL-CLRLIIFCFGLGII-----FNQISLLINVFKEANHSFSIHLYSHKNKD 54

Query: 55  ------NNLNLKEFPYSE 20
                 N +  K+ PYSE
Sbjct: 55  CVVPTWNRVTSKDVPYSE 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,272,329
Number of Sequences: 27780
Number of extensions: 178685
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)