Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_J10
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 157 2e-39
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 132 5e-32
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.6
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 3.4
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 26 6.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.0
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 26 7.9
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 157 bits (381), Expect = 2e-39
Identities = 81/158 (51%), Positives = 109/158 (68%), Gaps = 7/158 (4%)
Frame = +2
Query: 173 QPKNKVCI--VGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIEGK----KLTEI 331
+PK ++ I VGSGNWG+AIAKI G NA A +F +V MWV+EE IE K KLTE+
Sbjct: 18 RPKKRLSIGVVGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEV 77
Query: 332 INETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTA 511
NE HENVKYLPG + P NV+AVPDV E A+ AD+L+FVVPHQF+ +C ++G I+P A
Sbjct: 78 FNEAHENVKYLPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGA 137
Query: 512 AALSLIKGFDIAEGGGIDLISHIITRCLKIPCCCINGS 625
+S IKG +++ G+ L S +I+ L I C ++G+
Sbjct: 138 VGISCIKGVAVSK-EGVRLYSEVISEKLGIYCGVLSGA 174
Score = 48.4 bits (110), Expect = 1e-06
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +3
Query: 567 LYHILLQDA*KFPVAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRD----IIQTDYF 734
LY ++ + VL GAN+A+EVA E+FCETTIG + R+ + YF
Sbjct: 155 LYSEVISEKLGIYCGVLSGANVANEVAREQFCETTIGFNPPNEVDIPREQIAAVFDRPYF 214
Query: 735 RGRGGGX*XXXRNMWSVKNIVXVGAGFVDGLGYG 836
++KN+V + GF DGL +G
Sbjct: 215 SVVSVDDVAGVALGGALKNVVAMAVGFADGLEWG 248
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 132 bits (320), Expect = 5e-32
Identities = 73/151 (48%), Positives = 98/151 (64%), Gaps = 5/151 (3%)
Frame = +2
Query: 188 VCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEII--EGKK--LTEIINETHEN 352
V I+GSGNWG+AIAKI G NA + + F +V MW+YEE I EGK+ LTE+ N THEN
Sbjct: 27 VGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFNTTHEN 86
Query: 353 VKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIK 532
VKYL G K PSNV A PD+ + +D+L++V+PHQFV IC+ L G +K A A+S IK
Sbjct: 87 VKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAISCIK 146
Query: 533 GFDIAEGGGIDLISHIITRCLKIPCCCINGS 625
G + + + L S II + C ++G+
Sbjct: 147 GVSVTK-DRVRLFSDIIEENTGMYCGVLSGA 176
Score = 53.2 bits (122), Expect = 5e-08
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Frame = +3
Query: 612 VLMGANIASEVAEEKFCETTIG-CRDVMLAP-----LMRDIIQTDYFRGRGGGX*XXXRN 773
VL GANIASEVA+EKFCETTIG + + P ++ + YFR
Sbjct: 172 VLSGANIASEVAQEKFCETTIGYLPNSSVNPRYTPKTIQALFNRPYFRVNIVEDVPGVAL 231
Query: 774 MWSVKNIVXVGAGFVDGLGYGDTQR 848
++KNIV V AG +DGL GD +
Sbjct: 232 GGALKNIVAVAAGIIDGLELGDNTK 256
>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 75
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 363 RYLTFS*VSLIISVNFFPSIISSYTHIVTLSSK 265
RY TFS + L+ N FP ISS+ ++T K
Sbjct: 26 RYATFSILKLV-EYNCFPGFISSFHSLLTYRKK 57
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 458 QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 550
+ +R IC T+ G ++ + + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 327 SVNFFPSIISSYTHIVTLSSKFDR 256
+++ PSIISSYT + L++K R
Sbjct: 206 TISALPSIISSYTSLAPLNTKLYR 229
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 290 VYEEIIEGKKLTEIINETHENVKYL 364
+ ++ + +K E++NETHE K+L
Sbjct: 969 IQQKYLASEKTLEMMNETHEQFKHL 993
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 7.9
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Frame = +2
Query: 359 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVPH----QFVR---TICSTLLGKIKPTAA 514
Y+PG + V AV D VEA K D ++++ P Q+ T+ S + KI A
Sbjct: 59 YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIA 118
Query: 515 ALSLIKG 535
+ +L++G
Sbjct: 119 SAALLQG 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,418
Number of Sequences: 5004
Number of extensions: 65064
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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