Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J07
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    76   6e-15
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    62   1e-10
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    35   0.013
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    32   0.094
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    30   0.50 
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    29   0.66 
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    28   2.0  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         28   2.0  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    27   2.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   2.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   4.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   4.7  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    26   6.1  

>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 7/83 (8%)
 Frame = +3

Query: 144 AKVFRACTPPDAISLVSRLLEYTPGARLSPLQACVHSFFDELREPTARLPNG-------R 302
           ++VF    P DA+ L+S++L+YTP  RL+  +A  H FFDELR+P  +L N        R
Sbjct: 278 SRVFSRSVPLDALDLLSKMLQYTPTDRLTAAEAMCHPFFDELRDPNTKLHNSRNPDASPR 337

Query: 303 PLPPLFNFTEYELGIQPSLNEFL 371
            LP LFNF+ +EL I+P LN+ L
Sbjct: 338 HLPELFNFSPFELSIRPDLNQKL 360



 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +2

Query: 47  IKVLGTPTREQIREMNPNYTEFKFPQIKSHP 139
           IK+LGTP+REQI+ MNPNY E +FPQI+  P
Sbjct: 246 IKILGTPSREQIKTMNPNYMEHRFPQIRPQP 276


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
 Frame = +3

Query: 135 TLEAKVFRACTPPDAISLVSRLLEYTPGARLSPLQACVHSFFDELREPTARL----PNG- 299
           TLE+ +   CT  +A+ L+ ++L Y P  R+S ++   H FFDELR+P          G 
Sbjct: 269 TLESVMPHNCTK-NAMDLLHKMLTYVPSKRISAIEVLTHPFFDELRDPNCMYHCSRDEGT 327

Query: 300 --RPLPPLFNFTEYELGIQPSLNE 365
             R LPPLFNF   EL I+P+LN+
Sbjct: 328 IERHLPPLFNFNLAELSIRPNLNK 351



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 47  IKVLGTPTREQIREMNPNYTEFKFPQIKSH 136
           I+VLGTP+  +I  MNPNY     P ++ H
Sbjct: 239 IRVLGTPSYHEISVMNPNYVNHSLPNVRPH 268


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +3

Query: 81  SER*IQIIQNLSFRKSRVTLEAKVFRACTPPDAISLVSRLLEYTPGARLSPLQACVHSFF 260
           S+  ++ +Q+L  +K +V    K   A   PDAI L+ ++L + P  R+S   A  H++ 
Sbjct: 243 SKNTLRFVQSLP-QKEKVPFAEKFKNA--DPDAIDLLEKMLVFDPRKRISAADALAHNYL 299

Query: 261 DELREPT 281
               +PT
Sbjct: 300 APYHDPT 306


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 168 PPDAISLVSRLLEYTPGARLSPLQACVHSFFDELREPTAR 287
           PPDA  L+SRLL++ P  R+S  Q   H +  + ++   R
Sbjct: 310 PPDARDLISRLLQHNPEKRMSLEQVMRHPWIVKYKDSWTR 349


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 171 PDAISLVSRLLEYTPGARLSPLQACVHSFF 260
           P  + L+ ++L+Y P +R++  QA  H FF
Sbjct: 290 PQGLDLLMKMLQYDPKSRITAKQALEHVFF 319


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 174 DAISLVSRLLEYTPGARLSPLQACVHSFFDELREPT 281
           + I L+  +L+Y P  R +  QA  H +F  L +PT
Sbjct: 264 EEIDLLKMMLDYNPYRRPTAQQALEHHYFSALPKPT 299


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
 Frame = -3

Query: 854 ICRVSDTTPNNKYTNALLNNVSLQQHGPSVVANCDRERIKANYLIGRTD--NTDDVTNKN 681
           I  + D+TP     N  ++NVS     PS   + + E I    L   TD       +NKN
Sbjct: 443 IVALPDSTPYGMQHNVTIHNVSTIGKHPSFPLSNNGELIGEFTLSNITDVEKVCACSNKN 502

Query: 680 GIEQSVHRRTDGLRLGVRGMYTRRRSELTKVQSDHIAGQNLRRIFVSRRPGRLK 519
                   RT G+ + +  + T    EL+   S H  G  ++ +F S     L+
Sbjct: 503 IQISFSSDRTKGILVPLSAIMTCEHGELS---SKHKLGDRVKSLFGSHDESGLR 553


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 619 YIPRTPSLRPSVRRWTDCS 675
           Y  R PSL+P + RW +CS
Sbjct: 356 YHSRKPSLKPFISRWFNCS 374


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -1

Query: 343 PSSYSVKLKSGGSGRPLGR-RAVGSRSSSKKLCTQACSGDRRAPGVYSSSRDTSEMASGG 167
           PSS  +  +S  SG P+GR ++V   + ++ +  ++ S D      Y  S+  S  A+  
Sbjct: 197 PSSLGIYYRSPSSGSPIGRTKSVCLANKARIVPKRSMSSDGCVDKSYQMSKTPSLEANLP 256

Query: 166 VHARNTFASRV 134
            ++ N  A RV
Sbjct: 257 QNSSNCSARRV 267


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +3

Query: 105 QNLSFRKSRVTLEAKVFRACTPPDAI--SLVSRLLEYTPGARLSPLQACVHSFFDE 266
           +++++ +S  TLE ++F   +P  A+   L+ ++  Y P  R++  +A  H FF +
Sbjct: 630 KSINYLQSLQTLE-QIFAVSSPEVALLLDLLKKVFVYDPKRRITAKEALWHPFFTQ 684


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = -1

Query: 367 NSLSEGWMPSSYSVKLKSGGSGRPLGRRAVGSRSSSKKLCTQACSGDRRAPGVYSSSRDT 188
           N LS G  P   + K +      P+   A+   SSS +   Q+ S D  AP   S +  +
Sbjct: 565 NMLSVGEAPVESTSKEEDKDVPDPIAN-AMAELSSSMRR-RQSTSVDDEAPVSLSKTSSS 622

Query: 187 SEMASGGVHARNT 149
           + +   G H+RNT
Sbjct: 623 TRLNGLGYHSRNT 635


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 863 ALC--ICRVSDTTPNNKYTNALLNNVSLQQHGPSVVANCDRERIKANYLI 720
           ALC  +C + +TTP +    +LLN+  L +   S+  N    ++   YL+
Sbjct: 765 ALCKTVCLLIETTPMDMIYESLLNSSLLSRLLLSIATNDKHPQVLIEYLL 814


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 177 AISLVSRLLEYTPGARLSPLQACVHSFFD 263
           AI L+ +LLE  P  R+    A  H FF+
Sbjct: 376 AIDLLDKLLELHPSKRVKAKTALQHEFFN 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,476
Number of Sequences: 5004
Number of extensions: 48797
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)