Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J07
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical ...    83   3e-16
AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.      83   3e-16
Z79598-5|CAB01863.1|  367|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z27079-3|CAA81590.1|  332|Caenorhabditis elegans Hypothetical pr...    35   0.088
X68384-1|CAA48455.1|  332|Caenorhabditis elegans protein ( C.ele...    35   0.088
S75262-1|AAC60520.1|  332|Caenorhabditis elegans p34cdc2 kinase ...    35   0.088
AF129109-1|AAD37119.1|  332|Caenorhabditis elegans CDK1 ortholog...    35   0.088
U88175-4|AAB42279.1|  440|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    29   5.8  
Z81038-17|CAB76409.1|  381|Caenorhabditis elegans Hypothetical p...    28   7.7  
AL032656-5|CAB76732.1|  381|Caenorhabditis elegans Hypothetical ...    28   7.7  
AL031629-4|CAA20977.2|  436|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical
           protein Y18D10A.5 protein.
          Length = 362

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 36/57 (63%), Positives = 45/57 (78%)
 Frame = +3

Query: 147 KVFRACTPPDAISLVSRLLEYTPGARLSPLQACVHSFFDELREPTARLPNGRPLPPL 317
           KVFR  TP +AI L+S+++EYTP +R +P  AC H+FFDELR P ARLP+GRPLP L
Sbjct: 283 KVFRVHTPAEAIDLISKIIEYTPTSRPTPQAACQHAFFDELRNPDARLPSGRPLPTL 339



 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 32/42 (76%), Positives = 35/42 (83%)
 Frame = +2

Query: 47  IKVLGTPTREQIREMNPNYTEFKFPQIKSHP*GEGVPRVHAP 172
           IKVLGTPTREQI+ MNPNY EFKFPQIK+HP  + V RVH P
Sbjct: 250 IKVLGTPTREQIQSMNPNYKEFKFPQIKAHPWNK-VFRVHTP 290


>AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.
          Length = 362

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 36/57 (63%), Positives = 45/57 (78%)
 Frame = +3

Query: 147 KVFRACTPPDAISLVSRLLEYTPGARLSPLQACVHSFFDELREPTARLPNGRPLPPL 317
           KVFR  TP +AI L+S+++EYTP +R +P  AC H+FFDELR P ARLP+GRPLP L
Sbjct: 283 KVFRVHTPAEAIDLISKIIEYTPTSRPTPQAACQHAFFDELRNPDARLPSGRPLPTL 339



 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 32/42 (76%), Positives = 35/42 (83%)
 Frame = +2

Query: 47  IKVLGTPTREQIREMNPNYTEFKFPQIKSHP*GEGVPRVHAP 172
           IKVLGTPTREQI+ MNPNY EFKFPQIK+HP  + V RVH P
Sbjct: 250 IKVLGTPTREQIQSMNPNYKEFKFPQIKAHPWNK-VFRVHTP 290


>Z79598-5|CAB01863.1|  367|Caenorhabditis elegans Hypothetical
           protein C44H4.6 protein.
          Length = 367

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 36/53 (67%)
 Frame = +3

Query: 180 ISLVSRLLEYTPGARLSPLQACVHSFFDELREPTARLPNGRPLPPLFNFTEYE 338
           + L++ L++  P  R+ P +A    +FD+LR+P  +LP+G P+PPLF++ E E
Sbjct: 291 LELLNSLMKMDPKLRIKPYEALTLPYFDDLRDPHYKLPSGAPIPPLFDWLERE 343


>Z27079-3|CAA81590.1|  332|Caenorhabditis elegans Hypothetical
           protein T05G5.3 protein.
          Length = 332

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 177 AISLVSRLLEYTPGARLSPLQACVHSFFDELREPTARLPNG 299
           A SL+  LL Y P  RL+  +A VH +FD +   T++LP G
Sbjct: 285 AFSLLEGLLIYDPSLRLNAKKALVHPYFDNM--DTSKLPAG 323


>X68384-1|CAA48455.1|  332|Caenorhabditis elegans protein (
           C.elegans mRNA for p34cdc2 homologue. ).
          Length = 332

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 177 AISLVSRLLEYTPGARLSPLQACVHSFFDELREPTARLPNG 299
           A SL+  LL Y P  RL+  +A VH +FD +   T++LP G
Sbjct: 285 AFSLLEGLLIYDPSLRLNAKKALVHPYFDNM--DTSKLPAG 323


>S75262-1|AAC60520.1|  332|Caenorhabditis elegans p34cdc2 kinase
           protein.
          Length = 332

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 177 AISLVSRLLEYTPGARLSPLQACVHSFFDELREPTARLPNG 299
           A SL+  LL Y P  RL+  +A VH +FD +   T++LP G
Sbjct: 285 AFSLLEGLLIYDPSLRLNAKKALVHPYFDNM--DTSKLPAG 323


>AF129109-1|AAD37119.1|  332|Caenorhabditis elegans CDK1 ortholog
           protein.
          Length = 332

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 177 AISLVSRLLEYTPGARLSPLQACVHSFFDELREPTARLPNG 299
           A SL+  LL Y P  RL+  +A VH +FD +   T++LP G
Sbjct: 285 AFSLLEGLLIYDPSLRLNAKKALVHPYFDNM--DTSKLPAG 323


>U88175-4|AAB42279.1|  440|Caenorhabditis elegans Hypothetical
           protein F21F3.2 protein.
          Length = 440

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 171 PDAISLVSRLLEYTPGARLSPLQACVHSFFDELREPTARLPNGRPLPPLFNFTEYE 338
           PD +  + R+L Y P  RL   Q     FF  L +  A   NG+ +  +    +Y+
Sbjct: 274 PDQLQFIKRILVYAPEKRLRGKQLLQDDFFRPLFKAGAVRHNGQKISDVITAADYK 329


>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical
           protein AC3.5 protein.
          Length = 1090

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -3

Query: 836 TTPNNKY--TNALLNNVSLQQHGPSVVANCDRERIKANYLIGRTDNTDDVTNKNGIEQSV 663
           TTP + +  T   + N+   ++   V    D+E  K + ++ +   T  V+N NG+++  
Sbjct: 256 TTPVSSFVDTGIKVTNIEFDENLEKVTLTLDQELKKGSTVVLKIPFTSKVSNNNGLKEYK 315

Query: 662 HRRTDG 645
           ++ ++G
Sbjct: 316 YKNSEG 321


>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 132 LLICGNLN-SV*FGFISRICSLVGVPKTL 49
           LL+ GNLN SV   FIS ICSLV +P  L
Sbjct: 270 LLLDGNLNLSVTMTFISTICSLVMMPAWL 298


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +3

Query: 168 PPDAISLVSRLLEYTPGARLSPL----QACVHSFF 260
           PP+A  L  RLLE  P  RL  L    Q   H FF
Sbjct: 794 PPEAADLCRRLLEKNPAERLGTLNGAAQLMAHEFF 828


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +3

Query: 168 PPDAISLVSRLLEYTPGARLSPL----QACVHSFF 260
           PP+A  L  RLLE  P  RL  L    Q   H FF
Sbjct: 794 PPEAADLCRRLLEKNPAERLGTLNGAAQLMAHEFF 828


>Z81038-17|CAB76409.1|  381|Caenorhabditis elegans Hypothetical
           protein Y106G6E.1 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 174 DAISLVSRLLEYTPGARLSPLQACVHSFFDEL-REPTAR 287
           ++++++ ++L Y P  RLS ++   H +F+ L  E T R
Sbjct: 310 ESVAVLLQILVYNPNKRLSGIEILTHPYFNVLFNEKTVR 348


>AL032656-5|CAB76732.1|  381|Caenorhabditis elegans Hypothetical
           protein Y106G6E.1 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 174 DAISLVSRLLEYTPGARLSPLQACVHSFFDEL-REPTAR 287
           ++++++ ++L Y P  RLS ++   H +F+ L  E T R
Sbjct: 310 ESVAVLLQILVYNPNKRLSGIEILTHPYFNVLFNEKTVR 348


>AL031629-4|CAA20977.2|  436|Caenorhabditis elegans Hypothetical
           protein Y106G6D.4 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 198 LLEYTPGARLSPLQACVHSFFDELREPTARLPNGRPLPPLFNFTEYE 338
           +L Y P  RL   +   H FFD +  P   L NG  +  +    +Y+
Sbjct: 296 ILRYRPRERLHGPKLLSHPFFDLIFTPKCTLSNGLLVSQVITLDDYK 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,509
Number of Sequences: 27780
Number of extensions: 284871
Number of successful extensions: 892
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)