Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J05
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622     30   2.1  
04_04_0774 + 27986999-27987278,27987380-27987496,27987605-279877...    29   6.5  

>08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622
          Length = 349

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -2

Query: 346 NPSPLLSWAGVARRACPGGAE 284
           +P  ++  +GVARRACPGGA+
Sbjct: 2   DPGRVVFDSGVARRACPGGAQ 22


>04_04_0774 +
           27986999-27987278,27987380-27987496,27987605-27987759,
           27987855-27987929,27988025-27988321,27988448-27988780,
           27988880-27988996
          Length = 457

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -2

Query: 436 RDSSSEMT*RCWGSPVSP-GY*ASFW---RDASANPSPLLSWAGVARR 305
           R++SS+++  C G P SP G     W     A A P PLL   G ARR
Sbjct: 35  REASSDVSSECSGEPGSPYGSPYPRWPVCSIAKAPPPPLLQKLGAARR 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,939,306
Number of Sequences: 37544
Number of extensions: 183916
Number of successful extensions: 672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)