Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J04
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090...    29   4.8  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   4.8  
01_06_1280 - 35959452-35960105                                         29   4.8  
06_01_0690 + 5033943-5034740                                           29   6.3  
01_06_1298 - 36099408-36099686,36099760-36099927,36100036-361002...    29   6.3  

>09_06_0107 +
           20907560-20908491,20908511-20908625,20908967-20909058,
           20909293-20909556,20910714-20911494
          Length = 727

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = +1

Query: 712 PDXTXNXPXXPPGNPPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPP 855
           P  T   P  PP  PP  P    P+P T   +         P    PP
Sbjct: 75  PPQTPPSPPPPPPPPPPPPPPLSPTPTTTSWTTNSSSISASPILPPPP 122


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 733  PXXPPGNPPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPP 855
            P  PP  PP  PS   P P     SG  P     P    PP
Sbjct: 1166 PATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPP 1206


>01_06_1280 - 35959452-35960105
          Length = 217

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 409 ALTGRXGAGKGGSCIGRXPXPP 474
           AL G  GA   G C+GR P PP
Sbjct: 91  ALGGGAGADDAGLCLGRQPTPP 112


>06_01_0690 + 5033943-5034740
          Length = 265

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = +1

Query: 403 YSALTGRXGAGKGGSCIGRXPXPPGTDSLVXGARSRPXGXXSXXGGNTGXTXSGXNXG 576
           Y++  G  G G GG   G             G  S P G  S  GG  G    G N G
Sbjct: 27  YASAGGGGGGGGGGGGSGNGSGWGSGSGSGYGQASGPGGYASGGGGGGGGGGGGGNGG 84


>01_06_1298 -
           36099408-36099686,36099760-36099927,36100036-36100203,
           36100346-36100550,36100683-36100880,36101963-36102048,
           36103730-36104143
          Length = 505

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +1

Query: 403 YSALTGRXGAGKGGSCIGRXPXPPGTDSLVXGARSRPXGXXSXXGGNTG 549
           Y+ L    G G GGS  G  P PP +     G RS   G  +  G   G
Sbjct: 6   YNRLGSLGGGGGGGS--GAVPSPPSSPRRGAGRRSSGKGGSARAGAGAG 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,325
Number of Sequences: 37544
Number of extensions: 200170
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)