Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_J04
(864 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537888-1|CAD97884.1| 500|Homo sapiens hypothetical protein pr... 34 0.77
BC018135-1|AAH18135.1| 471|Homo sapiens pre-mRNA cleavage facto... 34 0.77
AJ275970-1|CAC81661.1| 471|Homo sapiens pre-mRNA cleavage facto... 34 0.77
L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein prot... 33 1.3
BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b, sub... 33 1.3
BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b, sub... 33 1.3
BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b, sub... 33 1.3
AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b, sub... 33 1.3
AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b, sub... 33 1.3
AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b, sub... 33 1.3
BC128191-1|AAI28192.1| 183|Homo sapiens PRB4 protein protein. 31 5.4
BC096211-1|AAH96211.1| 309|Homo sapiens PRB3 protein protein. 31 7.2
BC096210-1|AAH96210.1| 309|Homo sapiens PRB3 protein protein. 31 7.2
BC096209-1|AAH96209.1| 309|Homo sapiens PRB3 protein protein. 31 7.2
>BX537888-1|CAD97884.1| 500|Homo sapiens hypothetical protein
protein.
Length = 500
Score = 33.9 bits (74), Expect = 0.77
Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Frame = +2
Query: 593 PXTQRPPXXKKXXLMGLSHGHRPQKXPSQXSXLKPPGAXTRTXXXTXPXXPRGTPRXXXP 772
P RPP LMGL P P S PP P PR P P
Sbjct: 252 PYFNRPP--SALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVP 309
Query: 773 XXGX-PPXXXXXPAFFPXGKGAPXP 844
G PP PAFFP P
Sbjct: 310 PPGAIPPALHLNPAFFPPPNATVGP 334
>BC018135-1|AAH18135.1| 471|Homo sapiens pre-mRNA cleavage factor
I, 59 kDa subunit protein.
Length = 471
Score = 33.9 bits (74), Expect = 0.77
Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Frame = +2
Query: 593 PXTQRPPXXKKXXLMGLSHGHRPQKXPSQXSXLKPPGAXTRTXXXTXPXXPRGTPRXXXP 772
P RPP LMGL P P S PP P PR P P
Sbjct: 223 PYFNRPP--SALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVP 280
Query: 773 XXGX-PPXXXXXPAFFPXGKGAPXP 844
G PP PAFFP P
Sbjct: 281 PPGAIPPALHLNPAFFPPPNATVGP 305
>AJ275970-1|CAC81661.1| 471|Homo sapiens pre-mRNA cleavage factor
I, 59 kDa subunit protein.
Length = 471
Score = 33.9 bits (74), Expect = 0.77
Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Frame = +2
Query: 593 PXTQRPPXXKKXXLMGLSHGHRPQKXPSQXSXLKPPGAXTRTXXXTXPXXPRGTPRXXXP 772
P RPP LMGL P P S PP P PR P P
Sbjct: 223 PYFNRPP--SALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVP 280
Query: 773 XXGX-PPXXXXXPAFFPXGKGAPXP 844
G PP PAFFP P
Sbjct: 281 PPGAIPPALHLNPAFFPPPNATVGP 305
>L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein
protein.
Length = 424
Score = 33.1 bits (72), Expect = 1.3
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 697 PRGXNPDXTXNXPXXPPGN-PPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPPWG 861
P G P + P PPG PPG P P P +G P G P P G
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHG 289
>BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 33.1 bits (72), Expect = 1.3
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 697 PRGXNPDXTXNXPXXPPGN-PPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPPWG 861
P G P + P PPG PPG P P P +G P G P P G
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHG 289
>BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 33.1 bits (72), Expect = 1.3
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 697 PRGXNPDXTXNXPXXPPGN-PPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPPWG 861
P G P + P PPG PPG P P P +G P G P P G
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHG 289
>BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 33.1 bits (72), Expect = 1.3
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 697 PRGXNPDXTXNXPXXPPGN-PPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPPWG 861
P G P + P PPG PPG P P P +G P G P P G
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHG 289
>AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 33.1 bits (72), Expect = 1.3
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 697 PRGXNPDXTXNXPXXPPGN-PPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPPWG 861
P G P + P PPG PPG P P P +G P G P P G
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHG 289
>AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 33.1 bits (72), Expect = 1.3
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 697 PRGXNPDXTXNXPXXPPGN-PPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPPWG 861
P G P + P PPG PPG P P P +G P G P P G
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHG 289
>AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b,
subunit 4 variant protein.
Length = 424
Score = 33.1 bits (72), Expect = 1.3
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +1
Query: 697 PRGXNPDXTXNXPXXPPGN-PPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPPWG 861
P G P + P PPG PPG P P P +G P G P P G
Sbjct: 234 PPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHG 289
>BC128191-1|AAI28192.1| 183|Homo sapiens PRB4 protein protein.
Length = 183
Score = 31.1 bits (67), Expect = 5.4
Identities = 27/102 (26%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Frame = +2
Query: 551 PXNQGXTQERXCEXPXTQ---RPPXXKKXXLMGLSHGHRPQKXPSQX---SXLKPPGAXT 712
P QG Q + P + RPP H +P++ P Q S KP G
Sbjct: 60 PPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGKPQGPPQ 119
Query: 713 RTXXXTXPXXPRGTPRXXXPXXGXPPXXXXXPAFFPXGKGAP 838
+ P G P+ P G P PA P G P
Sbjct: 120 QEGNKPQGPPPPGKPQGPPPPGGNPQQPQAPPAGKPQGPPPP 161
>BC096211-1|AAH96211.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 30.7 bits (66), Expect = 7.2
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +1
Query: 679 KXXAQTPRGXN-PDXTXNXPXXPPGNPP-GXPSXXRPSPXTXXXSGXFPXXQGGPFXXXP 852
K + P+G N P T P P G PP G P P G P QGG P
Sbjct: 35 KPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEG--PPPQGGNQSQGP 92
Query: 853 P 855
P
Sbjct: 93 P 93
>BC096210-1|AAH96210.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 30.7 bits (66), Expect = 7.2
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +1
Query: 679 KXXAQTPRGXN-PDXTXNXPXXPPGNPP-GXPSXXRPSPXTXXXSGXFPXXQGGPFXXXP 852
K + P+G N P T P P G PP G P P G P QGG P
Sbjct: 35 KPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEG--PPPQGGNQSQGP 92
Query: 853 P 855
P
Sbjct: 93 P 93
>BC096209-1|AAH96209.1| 309|Homo sapiens PRB3 protein protein.
Length = 309
Score = 30.7 bits (66), Expect = 7.2
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +1
Query: 679 KXXAQTPRGXN-PDXTXNXPXXPPGNPP-GXPSXXRPSPXTXXXSGXFPXXQGGPFXXXP 852
K + P+G N P T P P G PP G P P G P QGG P
Sbjct: 35 KPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEG--PPPQGGNQSQGP 92
Query: 853 P 855
P
Sbjct: 93 P 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,901,181
Number of Sequences: 237096
Number of extensions: 1273791
Number of successful extensions: 3991
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3742
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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