Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_J04
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.2
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 3.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.3
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 7.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/85 (27%), Positives = 23/85 (27%)
Frame = +2
Query: 608 PPXXKKXXLMGLSHGHRPQKXPSQXSXLKPPGAXTRTXXXTXPXXPRGTPRXXXPXXGXP 787
PP S G P PPG T P P G P P G P
Sbjct: 687 PPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP----PITGGP 742
Query: 788 PXXXXXPAFFPXGKGAPXPXXXLGG 862
P P G P P GG
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +1
Query: 742 PPGNPPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPPWG 861
PP PPG P G P GGP PP G
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/85 (27%), Positives = 23/85 (27%)
Frame = +2
Query: 608 PPXXKKXXLMGLSHGHRPQKXPSQXSXLKPPGAXTRTXXXTXPXXPRGTPRXXXPXXGXP 787
PP S G P PPG T P P G P P G P
Sbjct: 687 PPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP----PITGGP 742
Query: 788 PXXXXXPAFFPXGKGAPXPXXXLGG 862
P P G P P GG
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +1
Query: 742 PPGNPPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPPWG 861
PP PPG P G P GGP PP G
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +1
Query: 694 TPRGXNPDXTXNXPXXPPGNPPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPP 855
+P G +P+ P G P PS P+P +G P GP P
Sbjct: 1003 SPSGPSPNGPSPNGPSPNGPSPNGPSPNGPTPNWPSPNGPSPNGPNGPSDPNKP 1056
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/85 (27%), Positives = 23/85 (27%)
Frame = +2
Query: 608 PPXXKKXXLMGLSHGHRPQKXPSQXSXLKPPGAXTRTXXXTXPXXPRGTPRXXXPXXGXP 787
PP S G P PPG T P P G P P G P
Sbjct: 270 PPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP----PITGGP 325
Query: 788 PXXXXXPAFFPXGKGAPXPXXXLGG 862
P P G P P GG
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGG 350
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +1
Query: 742 PPGNPPGXPSXXRPSPXTXXXSGXFPXXQGGPFXXXPPWG 861
PP PPG P G P GGP PP G
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 712 PDXTXNXPXXPPGNPPGXPSXXRPSPXTXXXSGXFPXXQGGP 837
P T + P P G+PP P+ P P P +G P
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 307
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 712 PDXTXNXPXXPPGNPPGXPSXXRPSPXTXXXSGXFPXXQGGP 837
P T + P P G+PP P+ P P P +G P
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 328
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 712 PDXTXNXPXXPPGNPPGXPSXXRPSPXTXXXSGXFPXXQGGP 837
P T + P P G+PP P+ P P P +G P
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 313
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +1
Query: 418 GRXGAGKGGSCIGRXPXPPGTDSLVXGARSRPXGXXSXXGGNTGXTXSGXNXG 576
G G G GG C G PP + G G GG G G G
Sbjct: 95 GGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGG 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,040,065
Number of Sequences: 27780
Number of extensions: 152192
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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