Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_J03
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 198 1e-51
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 136 3e-33
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 136 3e-33
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 120 4e-28
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 118 9e-28
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 106 5e-24
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 105 1e-23
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 95 1e-20
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 94 2e-20
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 90 3e-19
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 90 5e-19
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 87 2e-18
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 87 4e-18
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 85 1e-17
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 85 2e-17
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 81 2e-16
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 80 4e-16
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 80 5e-16
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 71 2e-13
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 70 5e-13
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 39 0.001
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 35 0.014
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 34 0.024
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 33 0.073
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 32 0.096
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 32 0.13
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.17
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 31 0.17
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.17
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 31 0.22
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 31 0.29
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 31 0.29
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 0.90
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 28 1.6
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 28 1.6
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 2.7
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 3.6
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 27 4.8
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.8
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 6.3
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 8.4
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 26 8.4
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 26 8.4
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 198 bits (482), Expect = 1e-51
Identities = 94/112 (83%), Positives = 101/112 (90%)
Frame = +3
Query: 522 KYYPTKSILLXSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 701
K P K L SLMMVEK+PDSTYEMVGGL+KQIKEIKEVIELPVKHPELF++LGI QPK
Sbjct: 121 KILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPK 180
Query: 702 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELFV 857
G+LLYGPPGTGKTLLARAVAHHT+C FIRVSGSELVQK+IGEG MVRELFV
Sbjct: 181 GILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFV 232
Score = 74.5 bits (175), Expect = 2e-14
Identities = 33/53 (62%), Positives = 41/53 (77%)
Frame = +2
Query: 392 KRRSSXKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPL 550
K + KVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPL
Sbjct: 78 KNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPL 130
Score = 67.7 bits (158), Expect = 2e-12
Identities = 31/58 (53%), Positives = 41/58 (70%)
Frame = +1
Query: 214 YYITKLEXLQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPM 387
YY K++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+K M
Sbjct: 19 YYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTM 76
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 859 MAREHAPSIIFMD 897
MAREHAPSIIFMD
Sbjct: 233 MAREHAPSIIFMD 245
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 136 bits (330), Expect = 3e-33
Identities = 64/100 (64%), Positives = 79/100 (79%)
Frame = +3
Query: 555 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 734
++M VE+ PD TY VGG +QI+ ++EV+ELP+ PE F LGI PKG++LYGPPGTG
Sbjct: 166 TMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTG 225
Query: 735 KTLLARAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
KTL ARAVA+ T+ TFIRV GSELVQK++GEG MVRELF
Sbjct: 226 KTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELF 265
Score = 32.3 bits (70), Expect = 0.096
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 428 KFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 547
KFVV L + V D+ RV Y + LP K+DP
Sbjct: 124 KFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDP 163
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 136 bits (330), Expect = 3e-33
Identities = 58/102 (56%), Positives = 82/102 (80%)
Frame = +3
Query: 549 LXSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 728
+ ++M ++K P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PG
Sbjct: 176 MINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPG 235
Query: 729 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
TGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +VR+LF
Sbjct: 236 TGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLF 277
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 120 bits (288), Expect = 4e-28
Identities = 54/100 (54%), Positives = 75/100 (75%)
Frame = +3
Query: 555 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 734
S++ ++ PD +Y VGGLD Q +E++E +ELP+ +L+ +GI P+GVLLYGPPGTG
Sbjct: 121 SMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTG 180
Query: 735 KTLLARAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
KT+L +AVA+ T FIRV GSE VQK++GEG MVR++F
Sbjct: 181 KTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVF 220
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 118 bits (285), Expect = 9e-28
Identities = 56/98 (57%), Positives = 74/98 (75%)
Frame = +3
Query: 561 MMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 740
M +E D ++ VGGL++QI+E++EVIELP+K+PELF +GI PKGVLLYGPPGTGKT
Sbjct: 121 MSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKT 180
Query: 741 LLARAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
LLARAVA F++V S +V K+IGE ++RE+F
Sbjct: 181 LLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMF 218
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 428 KFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPL 550
++VV NVD + + RV+L + T+ +ILP +VDPL
Sbjct: 77 RYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPL 117
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 106 bits (254), Expect = 5e-24
Identities = 48/98 (48%), Positives = 68/98 (69%)
Frame = +3
Query: 561 MMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 740
M V++ P Y +GGL KQI+E+ E I LP++ + F LG+ PKG L++GPPGTGKT
Sbjct: 174 MEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKT 233
Query: 741 LLARAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
LLARA A + TF++++ +LVQ FIG+G +VR+ F
Sbjct: 234 LLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAF 271
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 105 bits (251), Expect = 1e-23
Identities = 42/93 (45%), Positives = 68/93 (73%)
Frame = +3
Query: 591 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 770
Y+ +GG +Q+ +I+E++ELP++HP+LF ++GI P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 771 ECTFIRVSGSELVQKFIGEGXXMVRELFVNGQR 869
F ++G E++ K GE +R+ F ++
Sbjct: 283 GAFFFLINGPEIMSKMAGESESNLRKAFEEAEK 315
Score = 95.1 bits (226), Expect = 1e-20
Identities = 42/96 (43%), Positives = 64/96 (66%)
Frame = +3
Query: 567 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 746
V +VP+ +E +GGL++ +E++E +++PV + E F G+ KGVL +GPPGTGKTLL
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Query: 747 ARAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
A+A+A+ FI V G EL+ + GE VR++F
Sbjct: 548 AKAIANECSANFISVKGPELLSMWFGESESNVRDIF 583
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 95.1 bits (226), Expect = 1e-20
Identities = 42/97 (43%), Positives = 65/97 (67%)
Frame = +3
Query: 576 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 755
VP ++ +G L E++ I P+K PEL+ ++GI+ P GVLL+GPPG GKTLLA+A
Sbjct: 486 VPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKA 545
Query: 756 VAHHTECTFIRVSGSELVQKFIGEGXXMVRELFVNGQ 866
VA+ ++ FI + G EL+ K++GE VR++F+ +
Sbjct: 546 VANESKANFISIRGPELLNKYVGESERAVRQVFLRAR 582
Score = 91.1 bits (216), Expect = 2e-19
Identities = 42/95 (44%), Positives = 59/95 (62%)
Frame = +3
Query: 570 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 749
E D + +GGLD I E+ E++ +P+KHPE++ GI P+GVLL+GPPG GKT+LA
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLA 225
Query: 750 RAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
A+A+ FI +S +V GE VRE+F
Sbjct: 226 NALANELGVPFISISAPSIVSGMSGESEKKVREVF 260
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 94.3 bits (224), Expect = 2e-20
Identities = 40/89 (44%), Positives = 59/89 (66%)
Frame = +3
Query: 588 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 767
T+ +GGL QI +I++++ELP ++PELF I P+GVLLYGPPGTGKT++ RAVA
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAAE 336
Query: 768 TECTFIRVSGSELVQKFIGEGXXMVRELF 854
+ G +V K++GE +R++F
Sbjct: 337 ANAQVFTIDGPSVVGKYLGETESRLRKIF 365
Score = 93.1 bits (221), Expect = 5e-20
Identities = 42/92 (45%), Positives = 59/92 (64%)
Frame = +3
Query: 579 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 758
P+ + +GG ++ +++KE +E P+ H E F LG+ PKGVLLYGPPG KT+ A+A+
Sbjct: 543 PNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAI 602
Query: 759 AHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
A T FI V G EL KF+GE VR++F
Sbjct: 603 ATETGLNFIAVKGPELFDKFVGESERAVRQVF 634
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 90.2 bits (214), Expect = 3e-19
Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Frame = +3
Query: 546 LLXSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--IAQPKGVLLYG 719
++ S +++ D +++ +GG+D+ + ++ + + P+K+PE+FD G ++ PKG+LLYG
Sbjct: 73 IVASQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYG 132
Query: 720 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
PPG GKT+LA+A+A ++ TFI VS L K+ GE +V LF
Sbjct: 133 PPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALF 177
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 89.8 bits (213), Expect = 5e-19
Identities = 46/102 (45%), Positives = 67/102 (65%)
Frame = +3
Query: 549 LXSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 728
L S ++VEK P+ ++ + GL+ + +KE + LP+K P+LF G G+LLYGPPG
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPG 172
Query: 729 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
TGK+ LA+AVA TF +S S+LV K++GE +VR+LF
Sbjct: 173 TGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLF 214
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 87.4 bits (207), Expect = 2e-18
Identities = 40/93 (43%), Positives = 60/93 (64%)
Frame = +3
Query: 576 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 755
VP ++ +GGL++ +++ ++LP++ PELF G+ GVLLYGPPGTGKTLLA+A
Sbjct: 649 VPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKA 707
Query: 756 VAHHTECTFIRVSGSELVQKFIGEGXXMVRELF 854
VA F+ + G EL+ ++GE VR +F
Sbjct: 708 VATELSLEFVSIKGPELLNMYVGESEANVRNVF 740
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 86.6 bits (205), Expect = 4e-18
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Frame = +3
Query: 588 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA-- 761
++E VGGLD I ++KE++ LP+ +PE+F + P+GVL +GPPGTGKTL+ARA+A
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAAA 323
Query: 762 ---HHTECTFIRVSGSELVQKFIGEGXXMVRELFVNGQRT 872
+ + +F G++ + K++GE +R LF + T
Sbjct: 324 CSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKST 363
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 85.0 bits (201), Expect = 1e-17
Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Frame = +3
Query: 600 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTEC 776
+ GLD +KE + P PELF G+ +P +G+LL+GPPGTGKT+LARAVA +
Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQ--GLREPVQGMLLFGPPGTGKTMLARAVATEAKA 438
Query: 777 TFIRVSGSELVQKFIGEGXXMVRELF-VNGQRTC 875
TF +S S L K++G+ +VR LF V ++TC
Sbjct: 439 TFFSISASSLTSKYLGDSEKLVRALFEVAKRQTC 472
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 84.6 bits (200), Expect = 2e-17
Identities = 39/90 (43%), Positives = 59/90 (65%)
Frame = +3
Query: 600 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 779
V G+D+ +EI E ++ +K+P+ ++ LG P+G +L GPPGTGKTLLA+A A
Sbjct: 298 VAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVP 356
Query: 780 FIRVSGSELVQKFIGEGXXMVRELFVNGQR 869
F+ VSGSE ++ F+G G VR+LF ++
Sbjct: 357 FLSVSGSEFLEMFVGVGPSRVRDLFATARK 386
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 81.0 bits (191), Expect = 2e-16
Identities = 41/102 (40%), Positives = 63/102 (61%)
Frame = +3
Query: 564 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 743
M E+ + + V G+D+ +E++E+++ ++ P F LG P+GVLL GPPGTGKT+
Sbjct: 257 MEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 744 LARAVAHHTECTFIRVSGSELVQKFIGEGXXMVRELFVNGQR 869
LARAVA F +SGS+ + ++G G VRELF ++
Sbjct: 316 LARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARK 357
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 80.2 bits (189), Expect = 4e-16
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +3
Query: 591 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 767
++ + GL+ +KE + P P+LF G+ +P +G+LL+GPPGTGKT+LARAVA
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQ--GLREPARGMLLFGPPGTGKTMLARAVATE 515
Query: 768 TECTFIRVSGSELVQKFIGEGXXMVRELF 854
+ F +S S L KF+GE +VR LF
Sbjct: 516 SRSVFFSISASSLTSKFLGESEKLVRALF 544
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 79.8 bits (188), Expect = 5e-16
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Frame = +3
Query: 591 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA--- 761
+ +GGL+ I ++KE++ LP+ +PE+F L I P+GVL +GPPGTGKTL+AR +A
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLAANC 430
Query: 762 --HHTECTFIRVSGSELVQKFIGEGXXMVRELFVNGQR 869
+ + +F GS+ + K++GE +R LF +R
Sbjct: 431 STKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARR 468
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/89 (35%), Positives = 53/89 (59%)
Frame = +3
Query: 600 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 779
+ G+ + + ++++IE PVK+ ++ + P G+LL+G PG GKT LA A++
Sbjct: 608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQ 667
Query: 780 FIRVSGSELVQKFIGEGXXMVRELFVNGQ 866
FI + G EL+ K+IG+ VR+LF Q
Sbjct: 668 FISIKGPELLDKYIGKSEQGVRDLFSRAQ 696
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 69.7 bits (163), Expect = 5e-13
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Frame = +3
Query: 600 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 776
+GGLD + I + + P + + LGI KG+LLYGPPGTGKTL+AR +
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNA 330
Query: 777 TFIR-VSGSELVQKFIGEGXXMVRELFVNGQR 869
+ V+G E++ K++G+ VR+LF + +R
Sbjct: 331 REPKIVNGPEILNKYVGQSEENVRKLFADAER 362
Score = 29.9 bits (64), Expect = 0.51
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 705 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 803
VLL GP +GKT LA +A +E F+++ +E
Sbjct: 588 VLLSGPIASGKTALAATIALGSEFPFVKLVSAE 620
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 609 LDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 761
L+ +K+ I + + +++ + +D GI +G LLYGPPG+GKT A+A
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALA 263
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 35.1 bits (77), Expect = 0.014
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 603 GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP-GTGKTLLARAVAHHTECT 779
G L QI+E+ I P+K + DA + YG P G L V +HTE
Sbjct: 266 GSLRTQIEELAASINFPLKKLYVIDASRRSTHSNAFFYGLPWNKGIVLFDTLVKNHTEPE 325
Query: 780 FIRVSGSEL 806
I + G EL
Sbjct: 326 LIAILGHEL 334
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 34.3 bits (75), Expect = 0.024
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 705 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 800
++L+G GTGKT LAR +A T+ FI +S +
Sbjct: 123 MILWGSAGTGKTTLARLIAVTTKSRFIEISAT 154
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 32.7 bits (71), Expect = 0.073
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 609 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 788
LD+ +K+V + ++ + G Q K + L GPPG GKT + +++A F R
Sbjct: 542 LDRDHYGLKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFR 601
Query: 789 VS 794
S
Sbjct: 602 FS 603
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 32.3 bits (70), Expect = 0.096
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +3
Query: 693 QPKGVLLY-GPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 815
QP L+ GP GTGKTLL +A+A E IR+ SE ++K
Sbjct: 612 QPIASFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEK 656
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 699 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 806
+ +L+ GPP TGKT +A +A ++ F+ +S SE+
Sbjct: 66 RAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEV 103
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 699 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 803
K +LL G PG GKT L A+A T +R++ S+
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGHQLVRINLSD 1594
Score = 30.3 bits (65), Expect = 0.39
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 705 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL--VQKFIG 824
+L+ GP +GKT + VA T F+R++ E +Q++IG
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVRINNHEHTDLQEYIG 938
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 31.5 bits (68), Expect = 0.17
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 582 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI-AQPKGVLLYGPPGTGKTLLARAV 758
DS G + I +K++ K P L +L + PKG+ LYG G GKT L
Sbjct: 80 DSMPAEKGSILSWISPLKKMFSRK-KSPTLTSSLPVPGMPKGIYLYGDVGCGKTALMDLF 138
Query: 759 AHH 767
H+
Sbjct: 139 YHN 141
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 684 GIAQPKGVLLYGPPGTGKTLLARAVA 761
G+ K VLL GPPG GKT A VA
Sbjct: 405 GLGLYKAVLLSGPPGIGKTTAAHLVA 430
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 31.1 bits (67), Expect = 0.22
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 708 LLYGPPGTGKTLLARAVAHH 767
L+ GPPGTGKT+ + +V +H
Sbjct: 411 LIQGPPGTGKTVTSASVVYH 430
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 705 VLLYGPPGTGKTLLARAVAHHTE 773
+++ G PGTGKT LA VA TE
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTE 33
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 30.7 bits (66), Expect = 0.29
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 699 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 806
KGVL G GTGKT LA A+A + F + GSE+
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEV 102
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.1 bits (62), Expect = 0.90
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 696 PKGVLLYGPPGTGK-TLLARAVAHHTECTFIRVSG 797
P V + GPPGTGK TL+ V +++ T +++G
Sbjct: 74 PVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITG 108
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 368 EKWLNLWIKRRSSXKVHPEGKFVVDL 445
+ WL W KRR PE +F++ L
Sbjct: 372 QNWLYRWDKRRHGGVARPEARFLISL 397
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 705 VLLYGPPGTGKTLLARAVA 761
+L YGPPGTGKT A A
Sbjct: 59 MLFYGPPGTGKTSTILACA 77
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 708 LLYGPPGTGKTLLARAVAH---HTECTFIRVSGSELVQK 815
L GP G GKT L +A+A T+ IR SE +K
Sbjct: 536 LFLGPTGVGKTALTKALAEFLFDTDKAMIRFDMSEFQEK 574
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 705 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 803
++L G G GKT LA +AH + ++ S+
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQAGYKVLEINASD 451
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 386 WIKRRSSXKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKI 526
WI+ V + + + L D+ V NCRV R + + L KI
Sbjct: 69 WIETAIDYDVRAKPRNISSLTGTKDLQMVNINCRVLSRPDVHALPKI 115
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 579 PDSTYEMVGGLDKQIKEIKEV 641
P +YE++ GLDKQ + K+V
Sbjct: 18 PKESYELLHGLDKQYQSTKDV 38
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 708 LLYGPPGTGKT 740
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 717 GPPGTGKTLLARAVAHHTECTFIRVS 794
G PGTGKT+L V H + +V+
Sbjct: 199 GAPGTGKTVLLHNVLDHVVSDYPKVN 224
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 402 DLLFIHRFNHFSDVRSLFLQELQLLAQHTNFSVEFITLG 286
D IHR +H + + + L + HTN V+ + LG
Sbjct: 469 DTTNIHRDSHIGTINYMAPEALTDMNAHTNSGVKLVKLG 507
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 708 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 815
++ GP G+GKT +A+AV+ + F + G +L K
Sbjct: 18 VVIGPAGSGKTTMAKAVSE--KLGFEYIEGDDLHPK 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,863
Number of Sequences: 5004
Number of extensions: 54715
Number of successful extensions: 235
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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