Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J02
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...   170   2e-43
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   6.2  
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    26   8.2  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    26   8.2  

>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score =  170 bits (414), Expect = 2e-43
 Identities = 82/143 (57%), Positives = 104/143 (72%)
 Frame = +1

Query: 154 TNSVDNAWAMKXPKFTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIVA 333
           T+ +D+ W  K   FT DD+    LEES FATLFPKYRE+YL+E WP V + L +  I  
Sbjct: 28  TDDIDH-W--KIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWPHVTRALDKFGITC 84

Query: 334 ELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSF 513
            LDL+EGS+TVKTTRKT+DPY I+ ARD +KLL+RSVPF QA +++ D + CDIIKI + 
Sbjct: 85  VLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQDGVACDIIKIGNI 144

Query: 514 VRKKETFLKRRQRLIGPQGCYIK 582
           +R KE F+KRRQRLIG  G  +K
Sbjct: 145 LRNKERFVKRRQRLIGTNGQTLK 167



 Score =  126 bits (304), Expect = 4e-30
 Identities = 60/108 (55%), Positives = 75/108 (69%)
 Frame = +2

Query: 494 LLKLIHLFAKKKPF*XXXXXXXXXXXVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVR 673
           ++K+ ++   K+ F             TLK++ELLT+CY+LVQG TV+ +G YKGL +VR
Sbjct: 138 IIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVR 197

Query: 674 RIVEDTMKNIHPMYNIKSLMIKRELXKDPXLKNESWDXFLPTFXXXNV 817
           RIVED M NIHP+Y+IK LMIKREL KDP L NESWD FLP F   NV
Sbjct: 198 RIVEDCMHNIHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNV 245


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 232 ESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPY 396
           ES+F+ L   +R+ Y+K        I ++ H V   +L+      +  RK ++ Y
Sbjct: 138 ESRFSRLEEAFRDFYIKNLEKTEDLIRTDSHFVLNKELLSFRNDYEHRRKHYEKY 192


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 247 TLFPKYREQYLKECWPLVQKILSE 318
           T+ P Y  QYLK+   L+QK LSE
Sbjct: 3   TIVP-YSHQYLKDICQLIQKDLSE 25


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 244 ATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEG 354
           A + P+Y+EQY +E    + K+++E  I  + D+ +G
Sbjct: 290 ANILPQYQEQYFEE----MPKLIAEGKIKYKCDVYDG 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,488
Number of Sequences: 5004
Number of extensions: 53071
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)