Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_J02
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0480 + 29639124-29639412,29639476-29639552,29639639-296397... 129 7e-34
10_08_0225 - 15995436-15995555,15995655-15995735,15995813-159959... 121 9e-28
01_01_0096 + 737928-739894,740164-740221 31 1.6
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 30 2.8
12_01_0391 - 3086802-3087292,3089198-3089322,3089421-3089633,308... 29 6.5
01_05_0228 - 19535480-19536169,19536397-19536399 29 6.5
>01_06_0480 +
29639124-29639412,29639476-29639552,29639639-29639749,
29639944-29640012,29640650-29640706,29640814-29640852,
29640957-29641061,29641158-29641240,29641333-29641414,
29641760-29641903,29641987-29642067,29642166-29642294
Length = 421
Score = 129 bits (311), Expect(2) = 7e-34
Identities = 59/99 (59%), Positives = 77/99 (77%)
Frame = +1
Query: 268 EQYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVP 447
++YL+E WP+V+ L E + EL+L+EGS+TV TTRKT DPYIIIKA + +KLLSRSVP
Sbjct: 97 KKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVP 156
Query: 448 FEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGP 564
QA ++L+DE+ C IIKI S +R KE F+KRR RL+GP
Sbjct: 157 APQAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGP 195
Score = 113 bits (272), Expect = 2e-25
Identities = 55/114 (48%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Frame = +2
Query: 479 KLDATLLKLIHLFAKKKPF*XXXXXXXXXXXVTLKSIELLTECYVLVQGNTVSAVGPYKG 658
++ ++K+ + K+ F TLK+IE+LT CY+LVQGNT +A+G +KG
Sbjct: 167 EMSCAIIKIGSIIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTAAAMGYWKG 226
Query: 659 LVQVRRIVEDTMKNI-HPMYNIKSLMIKRELXKDPXLKNESWDXFLPTFXXXNV 817
L QV R+VED +KN+ HP+Y+IK L+IKREL K+P L +ESWD FLP F NV
Sbjct: 227 LKQVVRVVEDCIKNVKHPVYHIKELLIKRELVKNPALAHESWDKFLPKFKKKNV 280
Score = 33.5 bits (73), Expect(2) = 7e-34
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 184 KXPKFTPDDNPHGLLEESKFATLFPKYR 267
K +F P N G+LE + F+TLFP+YR
Sbjct: 41 KIEEFDPSWNEGGMLEVTSFSTLFPQYR 68
>10_08_0225 -
15995436-15995555,15995655-15995735,15995813-15995956,
15996305-15996386,15996479-15996561,15996655-15996759,
15996869-15996907,15997004-15997060,15997701-15997769,
15997959-15998069,15998382-15998564
Length = 357
Score = 121 bits (291), Expect = 9e-28
Identities = 59/114 (51%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Frame = +2
Query: 479 KLDATLLKLIHLFAKKKPF*XXXXXXXXXXXVTLKSIELLTECYVLVQGNTVSAVGPYKG 658
++ ++K+ + K+ F TLK+IE+LT CY+LVQGNTV+A+G +KG
Sbjct: 106 EMSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKG 165
Query: 659 LVQVRRIVEDTMKNI-HPMYNIKSLMIKRELXKDPXLKNESWDXFLPTFXXXNV 817
L QVRR+VED +KNI HP+Y+IK L+IKREL K+P L NESWD FLP F NV
Sbjct: 166 LKQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNV 219
Score = 108 bits (260), Expect = 5e-24
Identities = 48/73 (65%), Positives = 62/73 (84%)
Frame = +1
Query: 346 IEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKK 525
+EGS+TV TTRKT DPYII+KA++ +KLLSRSVP QA ++L+DE+ CDIIKI S +R K
Sbjct: 62 VEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKIGSIIRNK 121
Query: 526 ETFLKRRQRLIGP 564
E F+KRR+RL+GP
Sbjct: 122 ERFVKRRERLLGP 134
>01_01_0096 + 737928-739894,740164-740221
Length = 674
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -1
Query: 221 PCGLSSGVNLGXFIAQALSTELVXSTSILVFIKFSVASKEMIFLLKRLRREIYLEFGTQK 42
P GL S G + + ++ STS+L I +AS +I + +R+RR ++ Q+
Sbjct: 267 PSGLDSSSKRGGRLVATIVVSVIGSTSVLTII---IAS--IIIIKRRIRRHQEMQEEEQE 321
Query: 41 LKEXPI 24
+E P+
Sbjct: 322 FEELPL 327
>03_05_1149 + 30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 448 FEQASRVLDDEIGCDIIKI-NSFVRKKETFLKRRQRLI 558
F Q VL+D++GCD+I++ N V+ ++ + +L+
Sbjct: 1071 FRQEMHVLEDQVGCDLIQVDNRAVQSLLPYMSKFMKLL 1108
>12_01_0391 -
3086802-3087292,3089198-3089322,3089421-3089633,
3089726-3090711
Length = 604
Score = 28.7 bits (61), Expect = 6.5
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Frame = +1
Query: 205 DDNPHGLLEESKFATLFP--KYREQYLKECWPLVQKILSEHHIVAELDLIEGS--LTVKT 372
D NP + + +K A + Q+ P+ + I S + D I S L+ K+
Sbjct: 291 DKNPMDIKDSTKVAMPIAAESIKRQFYHCIQPIDEPIWSGIFKIGGNDYIPFSAHLSTKS 350
Query: 373 TRKTWDPYIIIKARDFMKLLSRSVPFE---QASRVLDDEIG 486
+K WD + I + + LSRSV + +AS DD IG
Sbjct: 351 CKKVWDLSVSIPSIVQVTKLSRSVVWPKSLEASSPTDDSIG 391
>01_05_0228 - 19535480-19536169,19536397-19536399
Length = 230
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/59 (25%), Positives = 36/59 (61%)
Frame = +1
Query: 364 VKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLK 540
+K +K +D I+K R + ++ S+P ++ ++ + IG D++KI++ R+ E +++
Sbjct: 132 IKAIKKRFDA--IVKGRSYYSTIANSIPVDRPAQHVSKTIG-DVMKIDA-QRRHEFYVE 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,950,186
Number of Sequences: 37544
Number of extensions: 286321
Number of successful extensions: 579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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