Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J02
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical ...   192   4e-49

>AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical
           protein C05C8.2 protein.
          Length = 370

 Score =  192 bits (467), Expect = 4e-49
 Identities = 85/129 (65%), Positives = 110/129 (85%)
 Frame = +1

Query: 196 FTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTT 375
           F+ +DNP+GLL+ES F++LFPKYRE+Y+KE WPL++K L EH + A+LDL+EG++ V+TT
Sbjct: 50  FSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTMCVRTT 109

Query: 376 RKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKKETFLKRRQRL 555
           RKTWDPYII+KAR+ +KLLSRSVP+EQA RVL+DEI C+IIKI+S VR KE F+KRR RL
Sbjct: 110 RKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVKRRARL 169

Query: 556 IGPQGCYIK 582
           IG  G  +K
Sbjct: 170 IGNDGATLK 178



 Score =  110 bits (265), Expect = 1e-24
 Identities = 51/103 (49%), Positives = 69/103 (66%)
 Frame = +2

Query: 494 LLKLIHLFAKKKPF*XXXXXXXXXXXVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVR 673
           ++K+  +   K+ F             TLK++ELLT+CYV VQG TV AVGP  GL Q+ 
Sbjct: 149 IIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQIN 208

Query: 674 RIVEDTMKNIHPMYNIKSLMIKRELXKDPXLKNESWDXFLPTF 802
           +IV D MKNIHP+YNIK++MIKREL K+  LK+ +WD +LP +
Sbjct: 209 QIVTDCMKNIHPIYNIKTMMIKRELSKNDELKDANWDAYLPNY 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,367,172
Number of Sequences: 27780
Number of extensions: 281041
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)