Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_J02
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   2.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +2

Query: 677 IVEDTMKNIHPMYNIKSLMIKRELXKDPXLKNESWDXFLP 796
           I +D     HPM + +   +   +  D     E+ D F+P
Sbjct: 385 IHDDRTLFFHPMSSFREFAVSTSILGDKKTAEENTDYFMP 424


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 453 FKRNTSR*QLHEVSRFNNNVWIP 385
           FK+ T    L   S F  N+W+P
Sbjct: 74  FKKRTGVETLSVGSEFIKNIWVP 96


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 453 FKRNTSR*QLHEVSRFNNNVWIP 385
           FK+ T    L   S F  N+W+P
Sbjct: 74  FKKRTGVETLSVGSEFIKNIWVP 96


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 453 FKRNTSR*QLHEVSRFNNNVWIP 385
           FK+ T    L   S F  N+W+P
Sbjct: 13  FKKRTGVETLSVGSEFIKNIWVP 35


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 108 QGNDFFIEKIEKRNLFR 58
           +GN+F + ++EKR+ FR
Sbjct: 291 RGNNFPVYQVEKRSPFR 307


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 190 PKFTPDDNPHGLLEESK 240
           PKF   DN +GL  ESK
Sbjct: 211 PKFPSMDNINGLSTESK 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,846
Number of Sequences: 438
Number of extensions: 3625
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)