Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_J01
(1051 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.022
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 32 0.12
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.19
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.47
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.83
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 1.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.022
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Frame = +1
Query: 706 PPPPPP------PXXXGXXXPPXXXXXXXXXXXXXXXXXXXXXPPPPPPPPP 843
PPPPPP P PP PPPPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 32.3 bits (70), Expect = 0.12
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +1
Query: 706 PPPPPPPXXXGXXXPPXXXXXXXXXXXXXXXXXXXXXPPPPPPPPP 843
PPPPP P PPPPPPPPP
Sbjct: 908 PPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953
Score = 23.4 bits (48), Expect(2) = 2.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 817 PPPPPPPP 840
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 22.6 bits (46), Expect(2) = 2.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 820 PPPPPPPP 843
PPPPPP P
Sbjct: 907 PPPPPPLP 914
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.83
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 817 PPPPPPPPP 843
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect(2) = 0.19
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 817 PPPPPPPPP 843
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
Score = 23.8 bits (49), Expect(2) = 0.19
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 706 PPPPPPP 726
PPPPPPP
Sbjct: 189 PPPPPPP 195
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.47
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +1
Query: 706 PPPPPPPXXXGXXXPPXXXXXXXXXXXXXXXXXXXXXPPPPPPP 837
PPPPPPP PP PPPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPP-----------IGNGSSNSSLPPPPPPP 343
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +1
Query: 706 PPPPPPPXXXGXXXPPXXXXXXXXXXXXXXXXXXXXXPPPPPP 834
PPP PPP PP PP PPP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 678 GGGXXXXXXPPPPPPP 725
G G PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 679 GGGXXXXXXPPPPPPP 726
G G PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
Score = 23.8 bits (49), Expect(2) = 2.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 1024 PPPPPPP 1004
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 22.6 bits (46), Expect(2) = 2.1
Identities = 9/26 (34%), Positives = 9/26 (34%)
Frame = -1
Query: 1021 PPPPPPXXXXXXXXFXXXXXGGGXPP 944
PPPPPP G PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPP 362
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.83
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 817 PPPPPPPPP 843
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 817 PPPPPPPP 840
P PPPPPP
Sbjct: 3 PAPPPPPP 10
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 820 PPPPPPPP 843
PPPPPP P
Sbjct: 5 PPPPPPAP 12
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 817 PPPPPPPP 840
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 820 PPPPPPPP 843
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 706 PPPPPPPXXXGXXXPP 753
PPPPPPP PP
Sbjct: 10 PPPPPPPGFEPPSQPP 25
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 817 PPPPPPPP 840
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 820 PPPPPPPP 843
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 817 PPPPPPPP 840
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 820 PPPPPPPP 843
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,123
Number of Sequences: 5004
Number of extensions: 28863
Number of successful extensions: 515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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