Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I24
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    69   9e-13
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.5  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   3.5  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   8.1  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 31/62 (50%), Positives = 47/62 (75%)
 Frame = +2

Query: 347 KKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 526
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P VYK+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 527 QA 532
           QA
Sbjct: 84  QA 85



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 30/41 (73%), Positives = 33/41 (80%)
 Frame = +1

Query: 661 GXDEKDVEIVMSQANVSRAKAVRALKNNQSDXVXAIMELTM 783
           G D KD+E+VM+QANVSRAKAV ALK N SD V AIM LTM
Sbjct: 133 GVDAKDIELVMAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 368  SKLGLK--PVQG--VERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQAT 535
            +KL LK  PV+G  VER  +    +I   +   D+Y  P  DT +V      ED S+   
Sbjct: 976  TKLDLKFSPVEGIMVERTAVNNFVDIGVSVAPKDLYGYPLYDTEVVSLAFNKEDASSMKG 1035

Query: 536  MGCSREIQ 559
            + C  +++
Sbjct: 1036 LCCFAKVE 1043


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 134 QQYIKMPELTELDKATASMTEKRKEE 211
           ++YIK  +LTELD     +T+ RK +
Sbjct: 205 KEYIKKCQLTELDPTQQLLTQSRKNQ 230


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 418 SDCHSLYSLYWFETEFTHYLSGLLLTTRLFRF 323
           +D    ++L W  T F H +S + +  RLF F
Sbjct: 184 ADIQCYFALSWLITWFAHDVSDISVVCRLFDF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,814
Number of Sequences: 5004
Number of extensions: 52731
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)