Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I23
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    28   1.6  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   3.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   8.3  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 203 TTCCEGWRGRWTRGPAVPCAY---RPRRLMTVGCASRSPGPSASQNLRDLSELRRMPHCT 373
           T    G  GR T+ P+VP +    + R+   +  ++ +  PS+ +NL  LS  R +P+  
Sbjct: 311 TFTATGNLGRPTKSPSVPTSVGSNKSRKFPGINGSTLTATPSSLENLYPLSSRRSVPNLI 370

Query: 374 DNSCCNPYHWS 406
            +   +P  +S
Sbjct: 371 SSLGTSPSTFS 381


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 408  VSANPKXPPPPYTRFAMDNYKPXRSXREHXXRAED 512
            +SA P   PPPY+ FA D      S +     +ED
Sbjct: 1033 ISAIPDDVPPPYSEFADDTTAQAGSSKRDSAISED 1067


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 414 ANPKXPPPPYTRFAMDNYKPXRSXREHXXR 503
           ++P  PPPP TR    ++KP     E   R
Sbjct: 43  SHPSNPPPPPTRLHDRSFKPVSKNYESEGR 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,563
Number of Sequences: 5004
Number of extensions: 25829
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)