Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I23
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1106 + 30440550-30440898,30442824-30442936,30443018-304435...    31   1.6  
04_03_0089 - 11027773-11028315                                         30   2.8  
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266...    28   8.7  
01_06_1612 - 38635703-38636215,38638725-38638967                       28   8.7  

>03_05_1106 +
           30440550-30440898,30442824-30442936,30443018-30443560,
           30443658-30443876
          Length = 407

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 404 SSGKGCSRNCRCSEASDAARTGRAGSG 324
           S G GCSR+   S  S AA TG AG+G
Sbjct: 4   SGGAGCSRSHSFSGISSAAATGGAGAG 30


>04_03_0089 - 11027773-11028315
          Length = 180

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 86  DGALDVSWRSRSDAAGGM*CSGVARCVGGW 175
           +GAL + W   SD  G + CS   R  GGW
Sbjct: 33  EGALGLQWPGISDVGGNL-CSRTTRIWGGW 61


>12_02_0585 +
           20824752-20825954,20826141-20826329,20826533-20826690,
           20826913-20827009,20827368-20827730,20829225-20829303,
           20830180-20830286
          Length = 731

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 221 WRGRWTRGPAVPCAYRPRRLMTVGCASRSPGPSASQ 328
           WR  WTR PA+     PR     GC +     +A++
Sbjct: 53  WRHLWTRAPALRFDVGPRSWRLGGCGATDEAAAAAR 88


>01_06_1612 - 38635703-38636215,38638725-38638967
          Length = 251

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 339 TCPSCVGCXXXXXXXXXXXXXGVVSANPKXPPPP 440
           TC  CVG              G  SA P  PPPP
Sbjct: 195 TCGPCVGARIFSTAGGAKEEGGEASAAPAEPPPP 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,876
Number of Sequences: 37544
Number of extensions: 259441
Number of successful extensions: 1125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)