Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I22
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.70 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.92 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 22/76 (28%), Positives = 22/76 (28%)
 Frame = +1

Query: 448 GGGXGDFFXXXXPPPPXGGGGXXFWXXXXXXXXXXXXXXXXXXXXGXXPPPGGXXGXPPX 627
           GGG G F      PPP  GG   F                     G    PGG  G P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 628 XGXPRGXXXXXGXPXG 675
            G   G     G P G
Sbjct: 247 FGG--GLGGFGGGPGG 260


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 508 PPPPXGGGGXGXGKNPXPPP 449
           PPPP G  G G    P PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 508 PPPPXGGGGXGXGKNPXPPP 449
           PPPP   G  G G  P PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 818 PXXNPPPGPPXXXPPGXNRXTLPP 889
           P  NPPP PP   PPG    + PP
Sbjct: 5   PPGNPPPPPP---PPGFEPPSQPP 25


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/57 (26%), Positives = 16/57 (28%)
 Frame = +2

Query: 725 PPPPGXXXKXXXXXXXXXXXXXXXXXXPGXXPXXNPPPGPPXXXPPGXNRXTLPPFS 895
           PPPP    +                  P   P   P    P   PP     TLPP S
Sbjct: 194 PPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQS 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,366
Number of Sequences: 5004
Number of extensions: 23597
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)