Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I21
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    73   4e-14
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    28   2.2  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   3.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   5.0  

>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
 Frame = +2

Query: 332 LVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTT---KKVESIELDIKNYSALAXWC 502
           L+IG GGREH + WKL +SP + K+Y APG+ G ++     K+E++ + + ++  L  + 
Sbjct: 7   LLIGNGGREHTIAWKLCESPLISKVYVAPGNGGTASNGAESKMENVNIGVCDFEQLVKFA 66

Query: 503 KDNIIDLVVIGPEDPLAHGI 562
            D  ++LV+ GPE PL  GI
Sbjct: 67  LDKDVNLVIPGPELPLVEGI 86



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 585 GIPCFGPNKAGAQIEAXKDWAKRXMTKYXXP 677
           GIPCFGP+   A++E  K ++K  M +   P
Sbjct: 94  GIPCFGPSALAARMEGSKVFSKDFMHRNNIP 124


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +2

Query: 269 KIGKVFFNLV*FLNKMSEANVLVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTTK 445
           K G V   +V   NK+    +++ GG     A+ + ++  P V KI+  PG+  ++  K
Sbjct: 167 KDGTVAPEIVYIANKIGAEAIILAGGAQAIAAMAYGISGVPKVNKIF-GPGNQFVTAAK 224


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 300 YTKLKKTFPIFNRFFTCSLFKIIVSYNGKGLLFIY 196
           + + +   P+ + +F CSLFK I+  N   + F++
Sbjct: 513 FVRNQSGIPVRSIYFACSLFKEIIEANTNRVKFVH 547


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 367  KSVFPTTSAY-YQNVRFRHFI*KLHQIKENFSNF 269
            K V  +T AY Y N  +     +LHQ+K++F+ F
Sbjct: 1244 KKVLDSTEAYDYDNYYYEKKGNELHQLKDSFNGF 1277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,728
Number of Sequences: 5004
Number of extensions: 56223
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)