Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I21
         (931 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical pr...    82   6e-16
U41996-7|AAA83476.1|  298|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like ...    30   2.7  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   4.7  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   4.7  
U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like pr...    29   6.3  
AL032643-4|CAA21662.1|  436|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical
           protein F38B6.4 protein.
          Length = 974

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 38/83 (45%), Positives = 56/83 (67%)
 Frame = +2

Query: 326 NVLVIGGGGREHALCWKLADSPNVKKIYCAPGSVGISTTKKVESIELDIKNYSALAXWCK 505
           NVL++G GGREHAL WK+  SP VK +  APG+ G S     E I+++  +  A+A +C+
Sbjct: 2   NVLIVGSGGREHALAWKMKQSPKVKNVIVAPGNGGHS-----ERIDINSNDLDAVADFCE 56

Query: 506 DNIIDLVVIGPEDPLAHGIVDXL 574
            + I  V+IGPE+PL++G+ D L
Sbjct: 57  KHNIHCVLIGPEEPLSNGLADHL 79



 Score = 31.5 bits (68), Expect = 0.89
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 597 FGPNKAGAQIEAXKDWAKRXMTKYXXP 677
           FGP K GAQ+E  K ++K  M +Y  P
Sbjct: 89  FGPLKDGAQLETSKSFSKHFMKEYGLP 115


>U41996-7|AAA83476.1|  298|Caenorhabditis elegans Hypothetical
           protein F38E1.10 protein.
          Length = 298

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 360 CSRPPPPITKTFASDILFRNYTKLKKTF--PIFNRFFTCSLFKIIVSYNGKGLLF 202
           CS+PP  IT+T        N+ + K TF  P F     C    +I S + K ++F
Sbjct: 181 CSKPPQLITQTIFDKQYAFNFPQTKFTFGTPSFTYTVGCQHVSMICSSSQKAIMF 235


>AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like
           protein-15 protein.
          Length = 587

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 432 IPTLPGAQ*IFFTLGESASFQQRACSRPPPPITK 331
           IPT+        TL  ++SF+Q    RPPPP T+
Sbjct: 90  IPTMQSTASRISTLTAASSFRQLRTGRPPPPSTQ 123


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 900  PGWDXXLGXPGKXFXQKXLXGPLXLXXXXPTHNPWRAGKPGSXSLP 763
            PG D   G PG+   ++ L GP+ +    P   P   G PG    P
Sbjct: 1160 PGRDGLDGLPGRP-GREGLPGPMAMAVRNPPGQPGENGYPGEKGYP 1204


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 900  PGWDXXLGXPGKXFXQKXLXGPLXLXXXXPTHNPWRAGKPGSXSLP 763
            PG D   G PG+   ++ L GP+ +    P   P   G PG    P
Sbjct: 1417 PGRDGLDGLPGRP-GREGLPGPMAMAVRNPPGQPGENGYPGEKGYP 1461


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 900  PGWDXXLGXPGKXFXQKXLXGPLXLXXXXPTHNPWRAGKPGSXSLP 763
            PG D   G PG+   ++ L GP+ +    P   P   G PG    P
Sbjct: 1416 PGRDGLDGLPGRP-GREGLPGPMAMAVRNPPGQPGENGYPGEKGYP 1460


>U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like
           protein protein 15 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 432 IPTLPGAQ*IFFTLGESASFQQRACSRPPPPITK 331
           IPT+        TL  +++F+Q    RPPPP T+
Sbjct: 90  IPTMQSTASRISTLTAASTFRQLRTGRPPPPSTQ 123


>AL032643-4|CAA21662.1|  436|Caenorhabditis elegans Hypothetical
           protein Y54E5A.6 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 389 PNVKKIYCAPGSVGISTTKKVESIELDIKNYSALAXWCKDNIIDLVVIGPEDPL 550
           P    I+C  G+  ++ T+K+  I   +K+ + +   CK  ++D     PED L
Sbjct: 111 PKPFSIHCGMGAALLTQTEKIVDILTSLKSAAKVPVTCKIRVLD----DPEDTL 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,992,224
Number of Sequences: 27780
Number of extensions: 333971
Number of successful extensions: 733
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)