Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I20
         (965 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.0  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   6.9  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 210  RVEKLLPKALKFSPQREQPMKSIATCVTVGIKVNMNYLRNNINLQINNVFL 362
            R+  +L + L  SPQ    ++   T     IK+N++ LR+ I+    N FL
Sbjct: 1096 RIFAILTRVLSDSPQIGLSLEKFLTNFEALIKMNVDILRDEIDKSTLNSFL 1146


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 327  NNINLQINNVFLFLNKYY 380
            N++   INNVFLFL  +Y
Sbjct: 1066 NDVEYYINNVFLFLLSFY 1083


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,731
Number of Sequences: 5004
Number of extensions: 29508
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)