Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_I18
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 156 3e-39
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 28 1.5
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 28 2.0
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 3.5
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 26 6.1
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 6.1
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 26 8.1
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 8.1
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 156 bits (379), Expect = 3e-39
Identities = 96/227 (42%), Positives = 132/227 (58%), Gaps = 25/227 (11%)
Frame = +2
Query: 182 TIKEGQAEICLTT-EKVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQK------ 340
++ EG A I + +VFYNPVQ+FNRDLS+ + + E + +A+ + +
Sbjct: 31 SLTEGSAIIPFSNPNEVFYNPVQQFNRDLSVTAIRAWSETRSKKIVAKSHHRHQLLDQNS 90
Query: 341 --------KLETVQDEESGGNPEPK---------ITILEALSATGLRSIRYAKEIPYASN 469
K +T D E + + TILEALSATGLRSIRYAKE+P
Sbjct: 91 ELSQENLTKCDTTHDFEKNCSEKTDSTSADNIAGFTILEALSATGLRSIRYAKELPNVKR 150
Query: 470 IIANDLSEQAVETIKHNIEHNQVSHIIETSHDDACMLMYKHKHPSKRFAAIDLDPYGCPS 649
I+ANDL E AV+TI+ N+ +N VS I+ + DA +M+ +K + IDLDPYG +
Sbjct: 151 ILANDLLENAVKTIEKNVNYNNVSDIVIPNKGDANAVMHMNKF---HYDVIDLDPYGSAA 207
Query: 650 IFLDSAVQSIQDGGLLLVTATDMAVLAGNS-PETCYCKYGAVSLKTN 787
FLD+AVQS+ GLL +T TD AVLAGN+ PE C+ YG SL++N
Sbjct: 208 PFLDAAVQSVSKDGLLCITCTDSAVLAGNAYPEKCFSNYGGSSLRSN 254
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 28.3 bits (60), Expect = 1.5
Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 3/150 (2%)
Frame = +2
Query: 185 IKEGQAEICLTTEKVFYNPVQEFNRDLSIAVLTLFIEDYKA---EKLARFEKKQKKLETV 355
+ +GQA + L NP Q NR L + L L D EK + + K E
Sbjct: 387 VADGQAPLKLPYNAT-ENPYQAANRFLELNQLPLSYTDEVVKFIEKNTQGHSLESKKEPN 445
Query: 356 QDEESGGNPEPKITILEALSATGLRSIRYAKEIPYASNIIANDLSEQAVETIKHNIEHNQ 535
+ +S + I + L + + + +N +N L +++++++ + +
Sbjct: 446 LESQSSNKIKTTIFPVSQLLFSNANVPAMCQRLRSLNNTKSNPLPAKSIDSLERALSSKK 505
Query: 536 VSHIIETSHDDACMLMYKHKHPSKRFAAID 625
++ + + C+ + ++RF A+D
Sbjct: 506 ITDTEKNELLETCLSILDSWSLAERFPALD 535
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 692 LLLVTATDMAVLAGNSPETCYCKYGAVSLKTNAVMRW 802
+LL++ T +++ N+PE CY KY K W
Sbjct: 76 ILLISFT--SIILFNAPEVCYLKYKDAFFKNYGAAEW 110
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 27.1 bits (57), Expect = 3.5
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 302 KAEKLARFEKKQKKLE-TVQDEESGGNPEPKITILEALSATGLRSIRYAKEIPYASNIIA 478
K + AR ++Q LE +++ S + TIL L + A+E+ +S I +
Sbjct: 786 KERREARRARRQTALEESLKAPISIEDATDPQTILAILKQKKAKKKHAAREMEISSQIPS 845
Query: 479 NDLSEQAVETIKHNIEHNQVSHII 550
ND S T + IE + VS I
Sbjct: 846 NDSSNVQTPTAESEIEEDGVSEPI 869
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 146 IFMRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVL---TLFIEDYKAEKL 316
++M + ++N + + I LT + F +N LSI VL TLF ED+ AE +
Sbjct: 167 LWMVLNCLTNAAFVLAMRKRIKLTNFRDF--DTMFYNNLLSIPVLVICTLFTEDWSAENI 224
Query: 317 AR 322
A+
Sbjct: 225 AQ 226
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 175 VRYSFHSHKDVVYIKTFVLFVKLIRT 98
+RY F + +DV++ K LF K RT
Sbjct: 708 IRYMFFNPEDVIWFKPIQLFTKQGRT 733
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +2
Query: 464 SNIIANDLSEQAVETIKHNIEHNQVSHIIETSHDDACMLMYKHK 595
+ ++A + + + +E I +E ++ + + + +HD+ M MYK K
Sbjct: 97 ARMVAPNGTVKGIEHIPQLVETSKKNLLKDINHDEVLMEMYKEK 140
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 221 EKVFYN-PVQEFNRDLSIA-VLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 394
+K FY FN SI+ L FI K EK A+ +++ KK++ NP+ I
Sbjct: 1500 DKQFYEREFTFFNEVTSISGKLKPFIRKSKPEKKAKIDEEMKKIKLDVGVYLPSNPDGVI 1559
Query: 395 TILEALSATGLRS 433
++ S L+S
Sbjct: 1560 VGIDRKSGKPLQS 1572
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,221
Number of Sequences: 5004
Number of extensions: 58874
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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