Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_I18
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77136-4|CAB00881.1| 526|Caenorhabditis elegans Hypothetical pr... 191 5e-49
AF059608-1|AAD13737.1| 526|Caenorhabditis elegans N2,N2-dimethy... 191 5e-49
U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate recep... 29 5.8
AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic gl... 29 5.8
Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical pr... 28 7.7
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 28 7.7
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 28 7.7
>Z77136-4|CAB00881.1| 526|Caenorhabditis elegans Hypothetical
protein ZC376.5 protein.
Length = 526
Score = 191 bits (466), Expect = 5e-49
Identities = 103/213 (48%), Positives = 140/213 (65%), Gaps = 3/213 (1%)
Frame = +2
Query: 152 MRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEK 331
++ E + I+EGQA++ VFYNPVQEFNRDL++ VL F D+ +K A E+
Sbjct: 13 IKSEDKEEVTVIQEGQAKVGFHGP-VFYNPVQEFNRDLTVTVLRQFSADH--QKWAE-EQ 68
Query: 332 KQKKLETVQDEESGG---NPEPKITILEALSATGLRSIRYAKEIPYASNIIANDLSEQAV 502
KQ K E ++ N + KI IL+ALSA+GLR++R++KE+P I+AND S+ AV
Sbjct: 69 KQLKTEEEPPKKKNKLAINEDGKIRILDALSASGLRALRFSKEVPNVGFIMANDFSDNAV 128
Query: 503 ETIKHNIEHNQVSHIIETSHDDACMLMYKHKHPSKRFAAIDLDPYGCPSIFLDSAVQSIQ 682
+I+ N++ N V I+E DA M M +H+ KRF A+DLDPYG S FLDSAVQ +
Sbjct: 129 ASIQENVKLNGVEDIVEAHFGDAVMTMMEHRGIDKRFHAVDLDPYGTASTFLDSAVQCVA 188
Query: 683 DGGLLLVTATDMAVLAGNSPETCYCKYGAVSLK 781
D G+L+VT TDMAVL GN+PE CY KY AV+ +
Sbjct: 189 DRGILMVTCTDMAVLCGNTPEACYNKYDAVTTR 221
>AF059608-1|AAD13737.1| 526|Caenorhabditis elegans
N2,N2-dimethylguanosine tRNA methyltransferase protein.
Length = 526
Score = 191 bits (466), Expect = 5e-49
Identities = 103/213 (48%), Positives = 140/213 (65%), Gaps = 3/213 (1%)
Frame = +2
Query: 152 MRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEK 331
++ E + I+EGQA++ VFYNPVQEFNRDL++ VL F D+ +K A E+
Sbjct: 13 IKSEDKEEVTVIQEGQAKVGFHGP-VFYNPVQEFNRDLTVTVLRQFSADH--QKWAE-EQ 68
Query: 332 KQKKLETVQDEESGG---NPEPKITILEALSATGLRSIRYAKEIPYASNIIANDLSEQAV 502
KQ K E ++ N + KI IL+ALSA+GLR++R++KE+P I+AND S+ AV
Sbjct: 69 KQLKTEEEPPKKKNKLAINEDGKIRILDALSASGLRALRFSKEVPNVGFIMANDFSDNAV 128
Query: 503 ETIKHNIEHNQVSHIIETSHDDACMLMYKHKHPSKRFAAIDLDPYGCPSIFLDSAVQSIQ 682
+I+ N++ N V I+E DA M M +H+ KRF A+DLDPYG S FLDSAVQ +
Sbjct: 129 ASIQENVKLNGVEDIVEAHFGDAVMTMMEHRGIDKRFHAVDLDPYGTASTFLDSAVQCVA 188
Query: 683 DGGLLLVTATDMAVLAGNSPETCYCKYGAVSLK 781
D G+L+VT TDMAVL GN+PE CY KY AV+ +
Sbjct: 189 DRGILMVTCTDMAVLCGNTPEACYNKYDAVTTR 221
>U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 8 protein.
Length = 489
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 532 VMFNIMLNCLNSLF*EIICNDIGSIWYFFSI 440
V+F +M N + ++ E+ SIW FFSI
Sbjct: 150 VIFLVMTNIIRKVYEEMTVTPFESIWVFFSI 180
>AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic
glutamate receptor GLR-8 protein.
Length = 406
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 532 VMFNIMLNCLNSLF*EIICNDIGSIWYFFSI 440
V+F +M N + ++ E+ SIW FFSI
Sbjct: 142 VIFLVMTNIIRKVYEEMTVTPFESIWVFFSI 172
>Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical
protein K05D4.2 protein.
Length = 338
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/82 (26%), Positives = 32/82 (39%)
Frame = +2
Query: 65 FELESCFVINIRTY*FNEQNKCFYINNIFMRMETISNLKTIKEGQAEICLTTEKVFYNPV 244
F L +CF+ + + + FY I+ I N I E + CL Y
Sbjct: 129 FSLRNCFLWILLV--LSNFSIWFYCCYIWNGSNDIKNEIVIPEFREVYCLEPNDYAYTGA 186
Query: 245 QEFNRDLSIAVLTLFIEDYKAE 310
Q F DLS L ++ + AE
Sbjct: 187 QYFYGDLSTGTLHMYTPSFAAE 208
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 293 EDYKAEKLARFEKKQKKL 346
E KA KLA+FE+KQKKL
Sbjct: 18 EAEKAAKLAKFEEKQKKL 35
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 167 ISNLKTIKEGQAEICLTTEKVFYNPVQEFNR 259
I+N KT +G+ E C + + Y VQ+F +
Sbjct: 37 INNAKTSLQGEIEFCRNSARDIYGEVQQFKQ 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,902,641
Number of Sequences: 27780
Number of extensions: 334980
Number of successful extensions: 1117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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