Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I17
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    31   0.31 
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    30   0.55 
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    27   3.8  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   6.7  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        26   8.9  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   8.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   8.9  

>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 23/68 (33%), Positives = 36/68 (52%)
 Frame = -1

Query: 294 ECCSSLEQESTIKERGLQRQRAKNRLFRAMAHYVNHHPNQVFWGRGAVKRQLGQRSGTVP 115
           E  +S+    T+ E+  QR+  +N+LFR    YVN + +Q FWG+  V      +  + P
Sbjct: 438 ELANSIHDALTMPEK--QREANENKLFR----YVNKYTSQ-FWGQSFVGELQRIQHYSHP 490

Query: 114 GYPRATRP 91
            +PR T P
Sbjct: 491 -HPRRTNP 497


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 62  PTRPQATCWGG--RVARGYPGTVPLRCPSCRFTAP 160
           P +P+ +  GG  ++   +P   P R P CRFT P
Sbjct: 46  PGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPP 80


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 76  SHMLGRSRCTRVPWHSPAALPELPLYGTSTP-KNLIRVMVHVVGHRPE 216
           +H    +   ++P+  P A P  P Y  STP   L R       H P+
Sbjct: 486 NHAFPHTSRMQIPYMKPNAFPSNPTYIASTPVTQLRRAFEQATAHVPQ 533


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 269 SPLLKNVDSNVKGRKTVYSGRWPTT*TITLIKFFGVE 159
           SP+ KN++ ++ G    Y G W T    +L + FG E
Sbjct: 84  SPIDKNIEGDIDGAGYAYHGYWNTD-YESLNEHFGTE 119


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = -2

Query: 587 GNKGDTEMLNTHTLPFSILLKHLSGXLSHERIHI*MYLEK*TNRGSAHISPKS 429
           GNK  T  LN   +PF I+    +  LS E+ ++ + LEK TN+ S H  P S
Sbjct: 359 GNKLWT--LNRVEIPFKIIS---ANSLSLEQENVFLNLEKLTNKASPHGLPIS 406


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 245 SPRSLIVDSCSKLEQHSTLSRSILLI 322
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 376 VKSAHFLTNRPKSAKSLINQKNRP 305
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,614,155
Number of Sequences: 5004
Number of extensions: 75036
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)