Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_I16
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical... 44 1e-04
AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical... 44 1e-04
AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical... 44 1e-04
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 44 1e-04
AF101318-4|AAC69346.1| 337|Caenorhabditis elegans Seven tm rece... 32 0.62
AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm rec... 32 0.62
U80027-22|AAC48112.1| 336|Caenorhabditis elegans Seven tm recep... 31 0.82
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 29 4.4
U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine rece... 29 5.8
AF101318-3|AAK68598.1| 336|Caenorhabditis elegans Seven tm rece... 29 5.8
>AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical
protein Y47D3A.17d protein.
Length = 449
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 804 VPDKPNYPLSLWFIMKNCIXKELS 875
VP++PN P++LW IMKNCI KELS
Sbjct: 56 VPERPNLPINLWSIMKNCIGKELS 79
>AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical
protein Y47D3A.17c protein.
Length = 842
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 804 VPDKPNYPLSLWFIMKNCIXKELS 875
VP++PN P++LW IMKNCI KELS
Sbjct: 449 VPERPNLPINLWSIMKNCIGKELS 472
>AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical
protein Y47D3A.17b protein.
Length = 627
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 804 VPDKPNYPLSLWFIMKNCIXKELS 875
VP++PN P++LW IMKNCI KELS
Sbjct: 234 VPERPNLPINLWSIMKNCIGKELS 257
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +3
Query: 804 VPDKPNYPLSLWFIMKNCIXKELS 875
VP++PN P++LW IMKNCI KELS
Sbjct: 373 VPERPNLPINLWSIMKNCIGKELS 396
>AF101318-4|AAC69346.1| 337|Caenorhabditis elegans Seven tm
receptor protein 68 protein.
Length = 337
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -3
Query: 212 CQFFLSLNTYLVHYFCTHNYLTIRVKLSKIVILWSNENIFRFFFRHLIVRSIPTKILRKF 33
C F + ++ ++ Y C + +++ +L+K N+ + R FF LIV+++ I
Sbjct: 202 CIFLIGIHYIIIIYCCLRMHFSMKKELAKFST--QNQKLQRQFFHALIVQTLGPTIFLVI 259
Query: 32 PYSEI 18
P S I
Sbjct: 260 PASPI 264
>AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm
receptor protein 63 protein.
Length = 336
Score = 31.9 bits (69), Expect = 0.62
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -3
Query: 203 FLSLNTYLVHYFC-THNYLTIRVKLSKIVILWSNENIFRFFFRHLIVRSIPTKILRKFP 30
FL+ YLV +C +L ++ +L+K+ I SN+++ R FF+ LI +SI I P
Sbjct: 204 FLNSLGYLVILYCGVQMHLNMKKELAKLSI--SNQDLQRQFFKALIAQSIGPTIFLVLP 260
>U80027-22|AAC48112.1| 336|Caenorhabditis elegans Seven tm receptor
protein 64 protein.
Length = 336
Score = 31.5 bits (68), Expect = 0.82
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 203 FLSLNTYLVHYFC-THNYLTIRVKLSKIVILWSNENIFRFFFRHLIVRSIPTKILRKFP 30
FL+ YLV +C +L ++ +L+K+ I SN+ + R FF+ LI +SI I P
Sbjct: 204 FLNSLGYLVILYCGVQMHLNMKKELAKLSI--SNQELQRQFFKALIAQSIGPTIFLVLP 260
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = -2
Query: 204 FFIT*HIFSTLFL----YA*LFNNSCETLQNCNFMVKRKYFSIFLP 79
FFI+ H+ +L L Y+ LF+ + +TLQ+C F ++F FLP
Sbjct: 65 FFISIHLVLSLLLKIVIYS-LFSGAPQTLQSCEFSFPSEFFD-FLP 108
>U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine
receptor, class h protein28 protein.
Length = 357
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = -3
Query: 239 RFASTFTYRCQFFLSLNTYLVHYFCTHNYLTIRVKLSKIVILWSNENIFRFFFRHLIVRS 60
R S Q++ L+ H F Y++ LS +L+ N++ +FF+ L+ +
Sbjct: 130 RLKSVLPITFQYY-KLSIRFGHLFVYGTYISSVCSLSNFALLYENQDNAKFFWYKLLAGN 188
Query: 59 IPTK 48
+P +
Sbjct: 189 MPAR 192
>AF101318-3|AAK68598.1| 336|Caenorhabditis elegans Seven tm
receptor protein 69 protein.
Length = 336
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = -3
Query: 200 LSLNTYLVHYFCTHNYLTIRVKLSKIVILWSNENIFRFFFRHLIVRSI-PTKIL 42
+S + +++ C +++++++L+K + N+ + R FF+ LIV+ I PT L
Sbjct: 207 ISFHYFIIIVCCYKMHISMKIELAKFSV--KNQTLHRQFFKALIVQIIGPTIFL 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,557,956
Number of Sequences: 27780
Number of extensions: 353033
Number of successful extensions: 936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -