Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_I13
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 194 2e-50
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 190 2e-49
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 27 3.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 3.5
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 6.1
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 8.1
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 194 bits (472), Expect = 2e-50
Identities = 95/142 (66%), Positives = 107/142 (75%)
Frame = +3
Query: 318 LVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 497
LV++G+ I V +ERDP I W +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAPS
Sbjct: 67 LVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSK 126
Query: 498 DAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 677
DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM
Sbjct: 127 DAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQK 186
Query: 678 XXDGPSGKLWRDGRGAQQNIXP 743
DGPS K WR GRGA NI P
Sbjct: 187 TVDGPSKKDWRGGRGASANIIP 208
Score = 98.3 bits (234), Expect = 1e-21
Identities = 46/63 (73%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
Frame = +2
Query: 134 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 310
K+GINGFGRIGR+VLR +I G QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE +
Sbjct: 5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64
Query: 311 GFL 319
G L
Sbjct: 65 GKL 67
Score = 43.6 bits (98), Expect = 4e-05
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +1
Query: 763 KLWGKVIPALNGKLTGXAFRVPVANVFV 846
K GKVIPALNGKLTG AFRVP +V V
Sbjct: 215 KAVGKVIPALNGKLTGMAFRVPTPDVSV 242
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 190 bits (463), Expect = 2e-49
Identities = 93/142 (65%), Positives = 106/142 (74%)
Frame = +3
Query: 318 LVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 497
LV++GN I V +ERDP I W +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAPS
Sbjct: 67 LVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSK 126
Query: 498 DAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 677
DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM
Sbjct: 127 DAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQK 186
Query: 678 XXDGPSGKLWRDGRGAQQNIXP 743
DGPS K WR GRGA NI P
Sbjct: 187 TVDGPSKKDWRGGRGASANIIP 208
Score = 101 bits (241), Expect = 2e-22
Identities = 47/63 (74%), Positives = 54/63 (85%), Gaps = 1/63 (1%)
Frame = +2
Query: 134 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 310
K+GINGFGRIGR+VLR A + K QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64
Query: 311 GFL 319
G L
Sbjct: 65 GKL 67
Score = 43.6 bits (98), Expect = 4e-05
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +1
Query: 763 KLWGKVIPALNGKLTGXAFRVPVANVFV 846
K GKVIPALNGKLTG AFRVP +V V
Sbjct: 215 KAVGKVIPALNGKLTGMAFRVPTPDVSV 242
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 691 LLENYGVMAVVLNKTSXLPLLVLPKLWGKVIPALNGKLTGXAFRVPVAN 837
+++N + AV ++ +LV+P L+G ++ + L G +P AN
Sbjct: 222 IVDNASMQAV--SRPQQFDVLVMPNLYGSILSNIGSALVGGPGVIPGAN 268
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 425 KDTSRL-YNIFSPSFSPRNGLRVPF*ENSNFVTINN-QGIHPEPQHCP*NGHGWNHT*KD 252
K TS+L + +P+F+P+ +P + FV +NN G +P Q+ G N
Sbjct: 17 KQTSKLSMSAKAPTFTPKAAPFIPSFQRPGFVPVNNIAGGYPYAQYTG-QGQNSNSPHPT 75
Query: 251 KPYSQ 237
K Y Q
Sbjct: 76 KSYQQ 80
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/75 (22%), Positives = 32/75 (42%)
Frame = -2
Query: 532 SRLTPTTNMGASALGADIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLS 353
S+L+PT + L A ++ S ++ +DS+TY P ++ SLS
Sbjct: 174 SQLSPTHTSTIAELAASTLSIFPSGSYAGSTFGSPSRSSIDSSTY----LPRSKSVNSLS 229
Query: 352 EKTAILLPLTTKESI 308
+ P + + S+
Sbjct: 230 SNFSARTPASNQSSV 244
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 90 SVIQQIFYNLPRTCQKLESMDL 155
+++QQI +NL R CQ + + D+
Sbjct: 245 NILQQIRFNLERICQDIGNFDV 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,565
Number of Sequences: 5004
Number of extensions: 71097
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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