Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I12
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    89   1e-18
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    29   0.65 
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.86 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   3.5  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   6.1  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   8.0  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   8.0  

>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
 Frame = +1

Query: 214 LPTVARLCLISTFLEDGLRMWFQWSEQ----RDYMDMSWGCGKFLATMFVIVNLFGQLGG 381
           +P + R  +++T+ ED +R+  QW EQ    RDY    +G    L  +FV V L   L G
Sbjct: 54  MPLLGRFLIVATYFEDAIRIVTQWPEQVSYMRDYRRFRFGTAPLL--LFVCVVLM--LVG 109

Query: 382 CVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQ-FXXXXXXXXXXXXXXXXXXXXXXX 558
             +V+ + +   A G L F+ +LQ FAY ++   + F                       
Sbjct: 110 STLVVFKKRQAYAIGSLLFVTLLQAFAYGLITSGEMFFRNMSVIGGLCLVASDTFIHRRI 169

Query: 559 SLFAGVPSLGENKPKTYLQLAGRILLAFMFITLLRFE---ISFLQIIQDLLGSILMILVT 729
           + FAG+P++ E+  +TY QLAGR+LL FMF+ LL  E   IS+ +I+  +L      +V 
Sbjct: 170 NRFAGLPAVSEHNKRTYFQLAGRVLLIFMFLGLLAKEGSGISWTRILVHILSVTACAMVV 229

Query: 730 VGYR 741
           +G++
Sbjct: 230 IGFK 233



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +2

Query: 800 NAWWAVPSYKPLRDFLKYDFFQTL 871
           N++W+VP   P RDF +YDFFQTL
Sbjct: 253 NSFWSVPRESPYRDFYRYDFFQTL 276


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 142 QIPNEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQ 282
           QIP    STA+  A+ + ++ +  LP V   C   TF  D L  +FQ
Sbjct: 41  QIPQIEGSTAKRDAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQ 87


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 352 SQTLWRGICRSPRTCPCSLS 293
           ++TLW  ICR  RTCP SLS
Sbjct: 352 ARTLW-AICRHLRTCPLSLS 370


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 247 TFLEDGLRMWFQWSEQRDYMDM 312
           T  +DGLR+W  W   +D  D+
Sbjct: 181 TIRKDGLRLWGSWKRGKDESDL 202


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 473 SILYANVCNTTMKNSTPQAISTLSLPSTITH 381
           +I  +N  NTT   ST Q  S+  +PS + H
Sbjct: 48  AIPQSNALNTTPNESTSQIDSSPKIPSAVPH 78


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 446 TTMKNSTPQAISTLSLPST-ITHPP 375
           T    STPQ  +T S P+T  THPP
Sbjct: 279 TPQSGSTPQMQNTTSQPTTHDTHPP 303


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 382 ILLIDQINLLSQTLWRGICRSPRTCPCSLS 293
           + L+  +NL S  L + +C S +  PC L+
Sbjct: 6   LFLLQNVNLESNYLLKRVCLSLKLSPCKLT 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,221
Number of Sequences: 5004
Number of extensions: 70480
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)