Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I12
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373...    32   0.52 
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213...    32   0.69 
08_02_1350 - 26312275-26313613,26314833-26315110                       31   0.91 
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282     30   2.1  
04_04_0734 + 27648661-27649596                                         29   3.7  
08_01_0542 + 4712480-4712635,4712683-4712787                           29   4.8  
08_01_0437 + 3850137-3850581,3851134-3851159                           28   8.5  
01_06_1074 + 34318685-34319314,34319429-34319546,34319662-343198...    28   8.5  

>01_05_0743 +
           24835349-24836009,24836925-24837068,24837154-24837306,
           24837627-24837742,24837826-24837993,24838610-24838737,
           24838827-24838926,24839119-24839205
          Length = 518

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 432 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGPS*RAQSVRGRAVARREQTEDV 608
           VL   + D+R  YT GR +   QFG+    T     G     +S+  R +A R+  EDV
Sbjct: 54  VLGRPMEDVRATYTFGRELGRGQFGVTYLVT-HKATGKRFACKSIATRKLAHRDDIEDV 111


>05_07_0280 -
           28920864-28920971,28921076-28921175,28921267-28921394,
           28922013-28922180,28922280-28922395,28922584-28922736,
           28922904-28923047,28923401-28924133
          Length = 549

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +3

Query: 432 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGPS*RAQSVRGRAVARREQTEDV 608
           VL   + D+R  YT GR +   QFG+   AT    G      +S+  R +AR +  +DV
Sbjct: 78  VLGRPMEDVRATYTFGRELGRGQFGVTYLATHKPTGRRY-ACKSIAARKLARPDDLDDV 135


>08_02_1350 - 26312275-26313613,26314833-26315110
          Length = 538

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
 Frame = -3

Query: 494 RRNC-TSHSILYANVC-NTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQ 321
           R NC T H++ Y   C +    +S+P  IS L               ++     +RN+P 
Sbjct: 387 RINCGTLHNVAYQENCWSEAQSSSSPPDISELG-DERGGFSSGEETMYSAETRESRNIPS 445

Query: 320 PQDMS--M*SLCSDHWNHMRRPSSRNVDIRHSRATVGKTFLPFRIT*SATSSAVDTYSLG 147
           P++ +  M        NH +  S ++V+      +   TF+P R      ++A+   S  
Sbjct: 446 PKEKNPKMVGRSQSFVNHSKWDSPKSVESSKGAPSKSHTFIPLRKP-HLQAAAISQKSQD 504

Query: 146 ICIFHAEHSTNTEKRNLTE 90
              F    S++ +KRNL++
Sbjct: 505 --FFSPTVSSSMKKRNLSQ 521


>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
          Length = 367

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 252 PGGRSPHVVPVVRAERLHGHVL-GLRQIPRHNVCDS--KFIWSIRRMCYGARKAQSGYRL 422
           PGG S             G V  G R+  +  V D+  + +  +RR+ YG R+  SG RL
Sbjct: 97  PGGGSARSAAAAAPTGRPGTVAAGTRRAGKKAVLDAGGRRVGHLRRLSYGVRERGSGRRL 156

Query: 423 RRAVLHSCITDIRVQYTMG 479
            R  L  C+T+  V +  G
Sbjct: 157 TR--LGWCMTEFGVDHGGG 173


>04_04_0734 + 27648661-27649596
          Length = 311

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 559 CALQLGPPPTPAVALRSMPNCGEG 488
           CA    PPP+PA  L+ +P C  G
Sbjct: 205 CAPPPNPPPSPATPLQPLPECDGG 228


>08_01_0542 + 4712480-4712635,4712683-4712787
          Length = 86

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +2

Query: 236 ALYPHSWRTVSACGSSGQ---SRETTWTCPGAAANSS 337
           A+  H+W    +CGSSG    + ETT T P   A  S
Sbjct: 14  AMIAHAWHDDGSCGSSGAAAIAAETTQTAPTTEARIS 50


>08_01_0437 + 3850137-3850581,3851134-3851159
          Length = 156

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 523 VALRSMPNCGEGTVRPIVYCTRMSVIQL*RTARRKRYP 410
           V LRS P CG    R +V+C     +Q    ARR+R P
Sbjct: 12  VQLRSHP-CGPPMGRTMVWCLHQDSVQRCAHARRRRRP 48


>01_06_1074 +
           34318685-34319314,34319429-34319546,34319662-34319814,
           34319906-34320021,34320135-34320302,34320424-34320551,
           34320645-34320744,34320866-34320958
          Length = 501

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 432 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGPS*RAQSVRGRAVARREQTEDV 608
           VL   + D+R  YT+G+ +   QFG+  S       G     +++  R ++ +E  EDV
Sbjct: 49  VLGRPMEDVRSIYTIGKELGRGQFGV-TSLCTHKATGQKFACKTIAKRKLSTKEDVEDV 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,157,833
Number of Sequences: 37544
Number of extensions: 525077
Number of successful extensions: 1739
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)