Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_I10
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 215 5e-57
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 215 5e-57
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 215 5e-57
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 129 4e-31
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.66
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.88
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 2.7
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 27 4.7
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 27 4.7
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 8.2
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 26 8.2
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 8.2
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 215 bits (526), Expect = 5e-57
Identities = 105/115 (91%), Positives = 109/115 (94%)
Frame = +2
Query: 80 GVKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 259
G KAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 72
Query: 260 REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 424
REIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QL
Sbjct: 73 REIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQL 127
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 49 RTKQTARKSTGGESSAQTTRDESCPK 126
RTKQTARKSTGG++ + ++ K
Sbjct: 3 RTKQTARKSTGGKAPRKQLASKAARK 28
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 215 bits (526), Expect = 5e-57
Identities = 105/115 (91%), Positives = 109/115 (94%)
Frame = +2
Query: 80 GVKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 259
G KAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 72
Query: 260 REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 424
REIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QL
Sbjct: 73 REIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQL 127
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 49 RTKQTARKSTGGESSAQTTRDESCPK 126
RTKQTARKSTGG++ + ++ K
Sbjct: 3 RTKQTARKSTGGKAPRKQLASKAARK 28
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 215 bits (526), Expect = 5e-57
Identities = 105/115 (91%), Positives = 109/115 (94%)
Frame = +2
Query: 80 GVKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 259
G KAPRKQLA+KAARK+APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV
Sbjct: 13 GGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV 72
Query: 260 REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 424
REIAQDFKTDLRFQSSA+ ALQEA EAYLV LFEDTNLCAIH KRVTI PKD+QL
Sbjct: 73 REIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQL 127
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 49 RTKQTARKSTGGESSAQTTRDESCPK 126
RTKQTARKSTGG++ + ++ K
Sbjct: 3 RTKQTARKSTGGKAPRKQLASKAARK 28
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 129 bits (312), Expect = 4e-31
Identities = 70/112 (62%), Positives = 88/112 (78%), Gaps = 10/112 (8%)
Frame = +2
Query: 119 ARKSAPATGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-- 280
A+KS A G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 281 --KTD--LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 424
TD LR+QS+A+ LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QL
Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQL 113
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.5 bits (63), Expect = 0.66
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = +2
Query: 149 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRFQSSAVMA 319
+ + HR + +L E + +++ S LLI P Q +RE+A DF +F+ +
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566
Query: 320 LQ---EASEAYLVGLFE 361
L+ E EAY+ L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 29.1 bits (62), Expect = 0.88
Identities = 14/66 (21%), Positives = 27/66 (40%)
Frame = +1
Query: 67 RKSTGGESSAQTTRDESCPKKRTGDRRREEAPQISTRHRSPQRDKAIPEKHRAFDPQAAV 246
+ GGE+ + S PK+ T + E P+ + + A+P + + P A
Sbjct: 406 KSQVGGETDTTDVINNSTPKEETEESPSTELPETGKEQPPNKAEPAVPTEASSTKPSEAA 465
Query: 247 SKISAR 264
+ + R
Sbjct: 466 EESTPR 471
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +1
Query: 79 GGESSAQTTRDESCPKKRTGDRRREEAPQISTRHRSPQRDKAIPEKHRAFDPQAAVSKIS 258
G ++ TT E + T EE+ + S DK++ KH D +++ S S
Sbjct: 317 GNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDKSLKRKHE--DDESSTSTKS 374
Query: 259 AR 264
+R
Sbjct: 375 SR 376
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 113 SSRVVCAELSPPVDFRAVC 57
S R V AELSP DFR C
Sbjct: 130 SQRPVYAELSPVTDFREAC 148
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 4.7
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Frame = +1
Query: 55 KQTARKSTGGESSAQTTRDESCPKKRTGDRRREEAPQISTRHRSPQRDKAIPEKHRAFDP 234
K++A +S+ T D P+ R R S+RHRSP + + P +
Sbjct: 77 KKSAEALAERSNSSMGTFDPP-PRYSKIARARSTHVASSSRHRSPSHNDSSPSTQSSLKS 135
Query: 235 QAAVSKISA----RNRPGL*DRSALSKFGRDGFTG 327
+ ++ + + +RPG + L + R TG
Sbjct: 136 RGSIRRYKSVREGSHRPGRSSKEPLDQIDRLDVTG 170
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 185 ALREIRRYQKSTELLIRKLPFQR 253
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 13 YDXTIGNSLRFCRTKQT-ARKSTGGESSAQTTRDESCPKKRTGDRRREEAPQISTRHRS 186
+D T S + KQ ARK+ G ++ T + P KRT +R+E+ + R R+
Sbjct: 52 FDETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTR-KRKEDGEEGGKRKRN 109
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = -3
Query: 202 PYLSEGYGAGSISVGLLHAAGRRCAFSGSFRRELFARSFHPLSTFGR 62
P+L Y I G++H A E R F PL +GR
Sbjct: 335 PFLQSNYVTNDIGTGIVHVAPGHGMEDYLLGLENNLRPFSPLDDYGR 381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,216
Number of Sequences: 5004
Number of extensions: 47299
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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