Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I10
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   8.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 59   RPPESRQGVKAPRKQLATKAARKSAPATGG 148
            +P  ++QG    + +  ++ A K  PATGG
Sbjct: 1001 QPANAQQGQAQAQAKPQSQEANKPKPATGG 1030


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 304 TLKAQIGLKVLGDFAH*SLKRQLADQKLGAFLVSPYLSEGYG 179
           T+K+ +  K L    H  L+ +  D +L    ++PYL++ YG
Sbjct: 49  TIKSNMA-KTLQFDVHMMLQFRYLDARLKFSNIAPYLNQIYG 89


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 369 TCAPFMPKGSPLCQRIFSWRGECGENEPKLKE 464
           +CAP  P  S LCQ+     G    N  ++++
Sbjct: 533 SCAPGAPLDSKLCQQCV---GNLASNNDRIRQ 561


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 369 TCAPFMPKGSPLCQRIFSWRGECGENEPKLKE 464
           +CAP  P  S LCQ+     G    N  ++++
Sbjct: 533 SCAPGAPLDSKLCQQCV---GNLASNNDRIRQ 561


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 369 TCAPFMPKGSPLCQRIFSWRGECGENEPKLKE 464
           +CAP  P  S LCQ+     G    N  ++++
Sbjct: 533 SCAPGAPLDSKLCQQCV---GNLASNNDRIRQ 561


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,656
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)