Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_I07
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0082 - 13372997-13373863,13373928-13374386 29 5.0
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 29 5.0
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 29 5.0
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.7
08_02_0310 + 15630589-15631035,15631989-15632134,15632732-156329... 28 8.7
03_05_0583 - 25838016-25838684 28 8.7
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 28 8.7
>12_02_0082 - 13372997-13373863,13373928-13374386
Length = 441
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 643 SCALLFRPXPLTGYLSAFLPSGSVALSHSSRXXVS 747
SCALLF P PL G LPS S + VS
Sbjct: 164 SCALLFSPMPLDGPTLGLLPSIDCRYSTKASIPVS 198
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/64 (32%), Positives = 24/64 (37%)
Frame = +2
Query: 602 QDYKDTRRFPWKLPRALSCSDPCRLPDTCPPFSLREAWRFLIAHACXYLSSXVGPFAPSW 781
Q+Y D + L R L S C PPF RFL C L+ G SW
Sbjct: 355 QNYNDMFQHAENL-RVLKLS-LCTFRFASPPFLCCRGLRFLGLDNCLDLNIDAGEEVQSW 412
Query: 782 GCVH 793
C H
Sbjct: 413 NCFH 416
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/64 (32%), Positives = 24/64 (37%)
Frame = +2
Query: 602 QDYKDTRRFPWKLPRALSCSDPCRLPDTCPPFSLREAWRFLIAHACXYLSSXVGPFAPSW 781
Q+Y D + L R L S C PPF RFL C L+ G SW
Sbjct: 355 QNYNDMFQHAENL-RVLKLS-LCTFRFASPPFLCCRGLRFLGLDNCLDLNIDAGEEVQSW 412
Query: 782 GCVH 793
C H
Sbjct: 413 NCFH 416
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 644 RALSCSDPCRLPDTCPPFSLREAWRFLIAHA 736
R L+C C P CPP+S W+ ++ A
Sbjct: 466 RELNCKSICHSP-MCPPYSAMTEWQHMVLSA 495
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>08_02_0310 +
15630589-15631035,15631989-15632134,15632732-15632900,
15633040-15633138,15633817-15633899,15634028-15634157
Length = 357
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 568 NRRSSQRWRNPTGL*RYQAFPLEAPSCALLFRPXPLTGYLSAFLPS 705
N +++RW+N + L P PS LL RP L+ L+A PS
Sbjct: 308 NDLTARRWKNGSWLLPLALIPFVGPSLYLLLRP-SLSSLLAATGPS 352
>03_05_0583 - 25838016-25838684
Length = 222
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +2
Query: 584 RGGETRQDYKDTRRFPWKLPRALSCSDPCRLPDTCPPFSLREAWRFLIAHACXYLSSXVG 763
RGG R + T + P +L CS+PCR TC P E ++ L Y G
Sbjct: 147 RGGP-RCAAEITLQCPGELRAKAGCSNPCRGNSTCGPTKDTEFFKKLCPETVTYARDGQG 205
>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = +2
Query: 473 CEQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPWK 637
C Q S+ V CW + S L KI A + G+ + Y + WK
Sbjct: 1564 CVQTLSEHKAAVTSVLCWDEKLLSCSLDKTVKIWAASKSGDLQVIYTHSEEHGWK 1618
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,824,677
Number of Sequences: 37544
Number of extensions: 455573
Number of successful extensions: 1332
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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