Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I06
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 470  YRSPQPNDRAQRVSEPRKRKSAQYANRLSPRVG 372
            Y  PQP +  Q  ++ + +  +Q AN+  P  G
Sbjct: 997  YTPPQPANAQQGQAQAQAKPQSQEANKPKPATG 1029


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 147 WVNLDPDMIRYIDEFGQTTTRM 212
           WV  + D +R +  FG+   RM
Sbjct: 342 WVPGNHDQLRLVSRFGEEKARM 363


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 147 WVNLDPDMIRYIDEFGQTTTRM 212
           WV  + D +R +  FG+   RM
Sbjct: 342 WVPGNHDQLRLVSRFGEEKARM 363


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 682 QAFPPGSSSCALPVPTLP 735
           QA P G++S  LP P  P
Sbjct: 245 QAAPQGAASANLPSPLYP 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,498
Number of Sequences: 438
Number of extensions: 5109
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)