Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I05
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/55 (30%), Positives = 19/55 (34%)
 Frame = +2

Query: 683 PPPXXLFXXFXVPXPXXGXXXXXLXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPP 847
           PPP  +      P P        + G    PP   PPG    G  P   P  PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP--PPGVAGAGPPP---PPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 27/100 (27%), Positives = 29/100 (29%)
 Frame = -2

Query: 876 GPXFXXXGEXGGGXXGKRXGXXPXXXXPGGXXXGGXXXXPXSXXWXXPXXGXGTXXFXNR 697
           G  F   G  GGG  G   G       PGG    G               G G     + 
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGG------------FGGEGHHHGGHG 224

Query: 696 XXGGGALXXKPXPKXLXGGPGXXXGPXAXLGXPPFPPGXG 577
             GGG    +  P    GGPG   G     G  P   G G
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,237
Number of Sequences: 5004
Number of extensions: 14167
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)