Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_I05
(949 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 35 0.11
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 33 0.25
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 32 0.77
02_04_0400 - 22608519-22608844,22609044-22609122 31 1.8
11_03_0182 + 11307275-11307368,11307485-11307594,11307654-113078... 29 4.1
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.4
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 28 9.4
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 34.7 bits (76), Expect = 0.11
Identities = 24/97 (24%), Positives = 27/97 (27%), Gaps = 4/97 (4%)
Frame = +2
Query: 578 PXPGGNGGXPRXAXGPXXXPGPPXXX----FGXGXXXRAPPPXXLFXXFXVPXPXXGXXX 745
P P +G P + P P PP + PPP L P
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPP 609
Query: 746 XXLXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPPXSP 856
L PP PP P P PPP P
Sbjct: 610 PILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLP 646
Score = 31.5 bits (68), Expect = 1.0
Identities = 22/79 (27%), Positives = 23/79 (29%)
Frame = +2
Query: 641 PPXXXFGXGXXXRAPPPXXLFXXFXVPXPXXGXXXXXLXGXXXXPPXXXPPGXXXXGXXP 820
PP G G APPP P G PP PP G
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSK--GPPPPPPPPLPPANRTNGPGV 708
Query: 821 XRXPXXPPPXSPFXXNXGP 877
P PPP P + GP
Sbjct: 709 PSAPPPPPPPPPANRSNGP 727
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 33.5 bits (73), Expect = 0.25
Identities = 29/102 (28%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Frame = +2
Query: 563 AXGXXPXPGGNGGXPRXAXGPXXXPGPPXXX-----FGXGXXXRA--PPPXXLFXXFXVP 721
A G P P G P A P PGPP FG G + PPP ++ P
Sbjct: 37 AYGHMPPPQG-APPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPP 95
Query: 722 XPXXGXXXXXLXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPP 847
P G + PP PP P P PP
Sbjct: 96 PPPYG-----VNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPP 132
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.9 bits (69), Expect = 0.77
Identities = 21/75 (28%), Positives = 21/75 (28%)
Frame = +2
Query: 623 PXXXPGPPXXXFGXGXXXRAPPPXXLFXXFXVPXPXXGXXXXXLXGXXXXPPXXXPPGXX 802
P P PP G G PPP P P G PP PP
Sbjct: 303 PPPHPLPPGAGAGAGTGAPPPPPAHP----AAPAPPPPAPSPSAAGAGSGPPPPPPPAAP 358
Query: 803 XXGXXPXRXPXXPPP 847
P P PPP
Sbjct: 359 AAPRPPGPGPGPPPP 373
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 30.7 bits (66), Expect = 1.8
Identities = 22/85 (25%), Positives = 22/85 (25%)
Frame = -3
Query: 860 KXGXGGXXXXXNGXGXXPXXXXXGGXXGGXXXGNXXVXXGXXPXGXXEXXXXXIGXXGXG 681
K G GG G G GG GG G G G G G G
Sbjct: 30 KQGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGG 89
Query: 680 PXGXNPXQRXXXGAXGPXXGXRPXW 606
G P GP P W
Sbjct: 90 GGGYYPPWNGGYYPPGPGHHHNPHW 114
>11_03_0182 +
11307275-11307368,11307485-11307594,11307654-11307856,
11307879-11307964,11308861-11308934,11308936-11309078,
11309485-11309594,11309645-11309787
Length = 320
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 512 FPXXXGXXXXGKGVXXGAXGXXPXPGGNGGXPRXAXG 622
FP G G GV GA P P GG R A G
Sbjct: 83 FPFSGGDVGSGGGVGAGAGVPPPSPSARGGVGRVARG 119
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +2
Query: 548 GVXXGAXGXXPXPGGNGGXPRXAXGPXXXPGPPXXXFGXG 667
G GA G P GG GG P A G G P G G
Sbjct: 163 GGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGG 202
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 28.3 bits (60), Expect = 9.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 606 GXPPFPPGXGXXPXAPXXTPLP 541
G PP+PPG P P P P
Sbjct: 414 GMPPYPPGGNAPPHHPRQEPAP 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,801,406
Number of Sequences: 37544
Number of extensions: 248993
Number of successful extensions: 731
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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