Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_I05
(949 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 33 0.30
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 30 2.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.7
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 4.9
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 4.9
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 6.4
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 8.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 8.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 8.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.5
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 33.1 bits (72), Expect = 0.30
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -2
Query: 690 GGGALXXKPXPKXLXGGPGXXXGPXAXLGX-PPFPPGXGXXPXAP 559
GG + P P G PG P G PP PPG P AP
Sbjct: 250 GGSSRPGPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAP 294
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/97 (28%), Positives = 29/97 (29%)
Frame = +2
Query: 587 GGNGGXPRXAXGPXXXPGPPXXXFGXGXXXRAPPPXXLFXXFXVPXPXXGXXXXXLXGXX 766
GG+ P GP PG P G PPP L P P L
Sbjct: 701 GGSSALPPITGGPPPPPGLPPI---TGGPPPPPPPGGLPPITGGPPPP--PPPGGLPPIS 755
Query: 767 XXPPXXXPPGXXXXGXXPXRXPXXPPPXSPFXXNXGP 877
PP PP P P PPP P GP
Sbjct: 756 GGPPPPPPP--------PGGCPPPPPPPPPGGFKGGP 784
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/102 (27%), Positives = 30/102 (29%), Gaps = 3/102 (2%)
Frame = +2
Query: 560 GAXGXXPXPGGNG---GXPRXAXGPXXXPGPPXXXFGXGXXXRAPPPXXLFXXFXVPXPX 730
G+ P GG G P GP P P G PPP L P P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 731 XGXXXXXLXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPPXSP 856
G PP PPG G P P P +P
Sbjct: 762 PPPP-----GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/97 (28%), Positives = 29/97 (29%)
Frame = +2
Query: 587 GGNGGXPRXAXGPXXXPGPPXXXFGXGXXXRAPPPXXLFXXFXVPXPXXGXXXXXLXGXX 766
GG+ P GP PG P G PPP L P P L
Sbjct: 701 GGSSALPPITGGPPPPPGLPPI---TGGPPPPPPPGGLPPITGGPPPP--PPPGGLPPIS 755
Query: 767 XXPPXXXPPGXXXXGXXPXRXPXXPPPXSPFXXNXGP 877
PP PP P P PPP P GP
Sbjct: 756 GGPPPPPPP--------PGGCPPPPPPPPPGGFKGGP 784
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/102 (27%), Positives = 30/102 (29%), Gaps = 3/102 (2%)
Frame = +2
Query: 560 GAXGXXPXPGGNG---GXPRXAXGPXXXPGPPXXXFGXGXXXRAPPPXXLFXXFXVPXPX 730
G+ P GG G P GP P P G PPP L P P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 731 XGXXXXXLXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPPXSP 856
G PP PPG G P P P +P
Sbjct: 762 PPPP-----GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/97 (28%), Positives = 29/97 (29%)
Frame = +2
Query: 587 GGNGGXPRXAXGPXXXPGPPXXXFGXGXXXRAPPPXXLFXXFXVPXPXXGXXXXXLXGXX 766
GG+ P GP PG P G PPP L P P L
Sbjct: 284 GGSSALPPITGGPPPPPGLPPI---TGGPPPPPPPGGLPPITGGPPPP--PPPGGLPPIS 338
Query: 767 XXPPXXXPPGXXXXGXXPXRXPXXPPPXSPFXXNXGP 877
PP PP P P PPP P GP
Sbjct: 339 GGPPPPPPP--------PGGCPPPPPPPPPGGFKGGP 367
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/102 (27%), Positives = 30/102 (29%), Gaps = 3/102 (2%)
Frame = +2
Query: 560 GAXGXXPXPGGNG---GXPRXAXGPXXXPGPPXXXFGXGXXXRAPPPXXLFXXFXVPXPX 730
G+ P GG G P GP P P G PPP L P P
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Query: 731 XGXXXXXLXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPPXSP 856
G PP PPG G P P P +P
Sbjct: 345 PPPP-----GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 381
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/105 (22%), Positives = 26/105 (24%), Gaps = 1/105 (0%)
Frame = +1
Query: 478 GXXPXXPXXXPXPXRRXVXXTG*GGXXG-GXGXXPXXRGKRGXPQXGRXPXXGPXAPXKX 654
G P P P + G G P G G + GP P K
Sbjct: 943 GPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNKPGPSGPNGPSDPNKPSPNGPSDPVKP 1002
Query: 655 LWXGFXPXGPXPXXPIXKXXXSXXPXGXXPXXTXXXPXXXPPXXP 789
G P GP P P P P P P P
Sbjct: 1003 SPSGPSPNGPSPNGPSPNGPSPNGPSPNGPTPNWPSPNGPSPNGP 1047
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/87 (24%), Positives = 22/87 (25%)
Frame = +1
Query: 604 PQXGRXPXXGPXAPXKXLWXGFXPXGPXPXXPIXKXXXSXXPXGXXPXXTXXXPXXXPPX 783
P G P P P + P P P P P P PP
Sbjct: 291 PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 350
Query: 784 XPPXXXXXGXXPXPFXXXXXPPFPXXG 864
PP G P PP P G
Sbjct: 351 PPPRYPSAGPGMYPPPPPSRPPAPPSG 377
Score = 29.1 bits (62), Expect = 4.9
Identities = 26/95 (27%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Frame = +2
Query: 578 PXPGGNGGXPRXAXGPXXXPGPPXXXFGXGXXXRAPPPXXLFXXF--XVPXPXXGXXXXX 751
P PG G P P P PP FG PPP + +P P
Sbjct: 302 PPPGRTPGPPGM---PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSA 358
Query: 752 LXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPPXSP 856
G PP PP P PPP P
Sbjct: 359 GPGMYPPPPPSRPPA------PPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/87 (24%), Positives = 22/87 (25%)
Frame = +1
Query: 604 PQXGRXPXXGPXAPXKXLWXGFXPXGPXPXXPIXKXXXSXXPXGXXPXXTXXXPXXXPPX 783
P G P P P + P P P P P P PP
Sbjct: 301 PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 360
Query: 784 XPPXXXXXGXXPXPFXXXXXPPFPXXG 864
PP G P PP P G
Sbjct: 361 PPPRYPSAGPGMYPPPPPSRPPAPPSG 387
Score = 29.1 bits (62), Expect = 4.9
Identities = 26/95 (27%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Frame = +2
Query: 578 PXPGGNGGXPRXAXGPXXXPGPPXXXFGXGXXXRAPPPXXLFXXF--XVPXPXXGXXXXX 751
P PG G P P P PP FG PPP + +P P
Sbjct: 312 PPPGRTPGPPGM---PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSA 368
Query: 752 LXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPPXSP 856
G PP PP P PPP P
Sbjct: 369 GPGMYPPPPPSRPPA------PPSGHGMIPPPPPP 397
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 660 PKXLXGGPGXXXGPXAXLGXPPFPPGXGXXP 568
P L GG G GP +G PP G G P
Sbjct: 154 PPPLMGGGGDPRGPPGGMGGPPGHGGMGGPP 184
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 660 PKXLXGGPGXXXGPXAXLGXPPFPPGXGXXP 568
P L GG G GP +G PP G G P
Sbjct: 434 PPPLMGGGGDPRGPPGGMGGPPGHGGMGGPP 464
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 560 GAXGXXPXPGGNGGXPRXAXGPXXXPGPPXXXFGXG 667
G G PG G R GP PGPP G G
Sbjct: 185 GHPGSPGNPGRGGQRSRGLPGPSGRPGPPGPAGGPG 220
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 560 GAXGXXPXPGGNGGXPRXAXGPXXXPGPPXXXFGXG 667
GA G PG G R GP PGP G G
Sbjct: 182 GAPGHPGAPGQGGQRSRGTPGPAGAPGPQGPAGGPG 217
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 560 GAXGXXPXPGGNGGXPRXAXGPXXXPGPPXXXFGXG 667
GA G PG G R GP PGP G G
Sbjct: 182 GAPGHPGAPGQGGQRSRGTPGPSGAPGPQGPAGGPG 217
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.5
Identities = 29/110 (26%), Positives = 30/110 (27%)
Frame = -2
Query: 855 GEXGGGXXGKRXGXXPXXXXPGGXXXGGXXXXPXSXXWXXPXXGXGTXXFXNRXXGGGAL 676
G GGG G G PG GG P G N G A
Sbjct: 86 GAGGGGGGG--GGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPG-----NPGKGASAP 138
Query: 675 XXKPXPKXLXGGPGXXXGPXAXLGXPPFPPGXGXXPXAPXXTPLPXXXXP 526
PG GP G PP PPG P +P P P
Sbjct: 139 CEPVTQPPCQPCPGGPPGPAGPAG-PPGPPGPDGNPGSPAGPSGPGPAGP 187
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.3 bits (60), Expect = 8.5
Identities = 29/110 (26%), Positives = 30/110 (27%)
Frame = -2
Query: 855 GEXGGGXXGKRXGXXPXXXXPGGXXXGGXXXXPXSXXWXXPXXGXGTXXFXNRXXGGGAL 676
G GGG G G PG GG P G N G A
Sbjct: 86 GAGGGGGGG--GGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPG-----NPGKGASAP 138
Query: 675 XXKPXPKXLXGGPGXXXGPXAXLGXPPFPPGXGXXPXAPXXTPLPXXXXP 526
PG GP G PP PPG P +P P P
Sbjct: 139 CEPVTQPPCQPCPGGPPGPAGPAG-PPGPPGPDGNPGSPAGPSGPGPAGP 187
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.3 bits (60), Expect = 8.5
Identities = 29/110 (26%), Positives = 30/110 (27%)
Frame = -2
Query: 855 GEXGGGXXGKRXGXXPXXXXPGGXXXGGXXXXPXSXXWXXPXXGXGTXXFXNRXXGGGAL 676
G GGG G G PG GG P G N G A
Sbjct: 86 GAGGGGGGG--GGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPG-----NPGKGASAP 138
Query: 675 XXKPXPKXLXGGPGXXXGPXAXLGXPPFPPGXGXXPXAPXXTPLPXXXXP 526
PG GP G PP PPG P +P P P
Sbjct: 139 CEPVTQPPCQPCPGGPPGPAGPAG-PPGPPGPDGNPGSPAGPSGPGPAGP 187
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.5
Identities = 29/110 (26%), Positives = 30/110 (27%)
Frame = -2
Query: 855 GEXGGGXXGKRXGXXPXXXXPGGXXXGGXXXXPXSXXWXXPXXGXGTXXFXNRXXGGGAL 676
G GGG G G PG GG P G N G A
Sbjct: 86 GAGGGGGGG--GGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPG-----NPGKGASAP 138
Query: 675 XXKPXPKXLXGGPGXXXGPXAXLGXPPFPPGXGXXPXAPXXTPLPXXXXP 526
PG GP G PP PPG P +P P P
Sbjct: 139 CEPVTQPPCQPCPGGPPGPAGPAG-PPGPPGPDGNPGSPAGPSGPGPAGP 187
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 719 PXPXXGXXXXXLXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPPXSP 856
P P G G PP PP G P PPP P
Sbjct: 257 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 719 PXPXXGXXXXXLXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPPXSP 856
P P G G PP PP G P PPP P
Sbjct: 278 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 719 PXPXXGXXXXXLXGXXXXPPXXXPPGXXXXGXXPXRXPXXPPPXSP 856
P P G G PP PP G P PPP P
Sbjct: 263 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,517,806
Number of Sequences: 27780
Number of extensions: 171383
Number of successful extensions: 790
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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