Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I04
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.055
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.055
 Identities = 19/50 (38%), Positives = 19/50 (38%)
 Frame = +3

Query: 747 PPXXPPXXGGXXPPPAXKXXPXPPPXXXXXGGPFXXPPGXXXTXXRXPPP 896
           PP  PP      P PA    P PPP     GGP   PP         PPP
Sbjct: 732 PPPPPPAV--IVPTPAPAPIPVPPP-APIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +3

Query: 747 PPXXPPXXGGXXPPPAXKXXPXPPPXXXXXGGPFXXP 857
           PP  PP   G  PPP     P PPP     G  +  P
Sbjct: 763 PPPPPPGVAGAGPPP----PPPPPPAVSAGGSRYYAP 795



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +2

Query: 758 PPPXGGXXPPPGX*XXXGAPPQXXXXGGPLXXXPRGXXNXXPXXPP 895
           PPP     P P        PP     G P    P G     P  PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 759  PPXXGGXXPPPAXKXXPXPPPXXXXXGGPFXXPP 860
            PP      PPP     P PP       GP   PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/84 (23%), Positives = 22/84 (26%), Gaps = 1/84 (1%)
 Frame = +3

Query: 645 APKXKXPPPPEXXXXXXXXXXXXXXXXXXXXXXXPPXXPPXXGGXXP-PPAXKXXPXPPP 821
           A K + PPPP                        PP       G  P PP  +  P PPP
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365

Query: 822 XXXXXGGPFXXPPGXXXTXXRXPP 893
                      PP         PP
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPP 389


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/65 (32%), Positives = 21/65 (32%)
 Frame = -1

Query: 820 GGGXGXXLXAGGGXXPPXXGGXXGGXXXXXXXXXXXXXXXXXGXXGXFSGGGGXXFXGAX 641
           GGG G     G G  PP  GG  G                  G  G F GG G  F G  
Sbjct: 187 GGGFGG-FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG-GFGGGP 244

Query: 640 PPFXG 626
             F G
Sbjct: 245 GGFGG 249


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 747  PPXXPPXXGGXXPPPAXKXXPXPPP 821
            PP  PP      P P+    P PPP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPP 1213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.146    0.488 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,386
Number of Sequences: 5004
Number of extensions: 22197
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)