Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_I02
         (890 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.35 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.35 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    26   0.46 
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    23   2.4  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    23   2.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.8  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 319 VIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTP---GYGDAIDNTDCFRS 471
           ++P+  E + Q V L     E    GVK+ L    T    GY D   + + F+S
Sbjct: 334 IVPEKEESSRQAVNLICDKFERSNIGVKIALEAATTEREGGYHDIWMSGESFKS 387


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 319 VIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTP---GYGDAIDNTDCFRS 471
           ++P+  E + Q V L     E    GVK+ L    T    GY D   + + F+S
Sbjct: 334 IVPEKEESSRQAVNLICDKFERSNIGVKIALEAATTEREGGYHDIWMSGESFKS 387


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 702 SLNFFLSETVRFGDNRYDVNFVVQLFHELNIKR 604
           S N+F ++T  F +  ++ +F++Q  H L+I R
Sbjct: 567 SSNYFANKTYDFHNMSFENDFIIQPKHLLSIAR 599


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +1

Query: 364 DASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNI 543
           D S + IEE   +++ T  DT   G+  DN      +++Y  + F++  + +   N R +
Sbjct: 34  DVSLLTIEEGIFEVKATAGDTHLGGEDFDN-----RLVEYCTQDFKKKHKADISGNPRAL 88

Query: 544 VDNRIHC 564
              R  C
Sbjct: 89  RRLRTQC 95


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +1

Query: 364 DASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNI 543
           D S + IEE   +++ T  DT   G+  DN      +++Y  + F++  + +   N R +
Sbjct: 34  DVSLLTIEEGIFEVKATAGDTHLGGEDFDN-----RLVEYCTQDFKKKHKADISGNPRAL 88

Query: 544 VDNRIHC 564
              R  C
Sbjct: 89  RRLRTQC 95


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 490 RQCIELWIENNPCY 449
           RQ + +W+ +NP Y
Sbjct: 657 RQTLAMWLNHNPNY 670


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,448
Number of Sequences: 336
Number of extensions: 3061
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)