Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_I02
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 216 2e-56
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 170 1e-42
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 170 1e-42
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 170 1e-42
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 34 0.12
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 34 0.12
U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical pr... 33 0.21
U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical pr... 33 0.21
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 32 0.48
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 31 0.84
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 31 1.1
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 31 1.1
Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical pr... 31 1.5
U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein. 31 1.5
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 30 2.6
U50311-4|AAA92309.1| 491|Caenorhabditis elegans Serpentine rece... 30 2.6
U50311-3|AAK68203.1| 589|Caenorhabditis elegans Serpentine rece... 30 2.6
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 30 2.6
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 30 2.6
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 30 2.6
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 30 2.6
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 29 3.4
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 29 3.4
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 29 3.4
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis... 29 4.5
U40411-2|AAR25660.2| 413|Caenorhabditis elegans Hypothetical pr... 29 5.9
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 29 5.9
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 28 7.8
U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical p... 28 7.8
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 216 bits (527), Expect = 2e-56
Identities = 100/205 (48%), Positives = 140/205 (68%), Gaps = 2/205 (0%)
Frame = +1
Query: 163 PGYVGFANLPNQVHXKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDA-TE 339
P Y GFAN PNQV ++VK GF+FTLMVVG SGLGKST +N+LFL ++ A T
Sbjct: 25 PNYWGFANFPNQVFRRAVKNGFDFTLMVVGRSGLGKSTFINTLFLAEINNLNEKESAPTH 84
Query: 340 KTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDE 519
TV+++ V++ E V L LT+VDTPG+GDA++N+ C+ I+ Y++ +F +E
Sbjct: 85 PHPSTVRVEEKLVKLVENSVSLNLTLVDTPGFGDAVNNSKCWEPIVNYVESKFFEQFCEE 144
Query: 520 SGLNR-RNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLTKKEV 696
+ ++R IVD +H C YFI P GHGLKP+DIE MK LH +VNIVPVI+KADCLT+ E+
Sbjct: 145 TRIDRGEKIVDKCVHLCLYFIEPSGHGLKPIDIELMKHLHGRVNIVPVISKADCLTRDEL 204
Query: 697 QRLKSRVMEEIEREGIKIYPLPDCD 771
R K +++++ E IK+Y P+ +
Sbjct: 205 LRFKKQIVKDAETAEIKLYKFPELE 229
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 170 bits (413), Expect = 1e-42
Identities = 86/210 (40%), Positives = 136/210 (64%), Gaps = 2/210 (0%)
Frame = +1
Query: 148 QILXTPGYVGFANLPNQVHXKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIP 327
+++ G+VGF +LP+Q+ K+V+ GF+F LM VGE+G GK+TL+ SLF L E P
Sbjct: 72 RLMQLNGHVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---P 128
Query: 328 DATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERF 507
E +TV+L T ++ E G++++L +V+T G+GD +D + I+ Y++ QFE +
Sbjct: 129 CNHEL--KTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETY 186
Query: 508 LRDESGLNR--RNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCL 681
L++E R + D+RIH C YFISP GHGLK LD+ +++L +VN++PVIAK+D
Sbjct: 187 LQEELKPRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKRVNVIPVIAKSDTT 246
Query: 682 TKKEVQRLKSRVMEEIEREGIKIYPLPDCD 771
K E+ R K++++ E++ + I IY P D
Sbjct: 247 CKDELLRFKAKILSELKSQKIDIYTFPTDD 276
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 170 bits (413), Expect = 1e-42
Identities = 86/210 (40%), Positives = 136/210 (64%), Gaps = 2/210 (0%)
Frame = +1
Query: 148 QILXTPGYVGFANLPNQVHXKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIP 327
+++ G+VGF +LP+Q+ K+V+ GF+F LM VGE+G GK+TL+ SLF L E P
Sbjct: 72 RLMQLNGHVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---P 128
Query: 328 DATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERF 507
E +TV+L T ++ E G++++L +V+T G+GD +D + I+ Y++ QFE +
Sbjct: 129 CNHEL--KTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETY 186
Query: 508 LRDESGLNR--RNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCL 681
L++E R + D+RIH C YFISP GHGLK LD+ +++L +VN++PVIAK+D
Sbjct: 187 LQEELKPRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKRVNVIPVIAKSDTT 246
Query: 682 TKKEVQRLKSRVMEEIEREGIKIYPLPDCD 771
K E+ R K++++ E++ + I IY P D
Sbjct: 247 CKDELLRFKAKILSELKSQKIDIYTFPTDD 276
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 170 bits (413), Expect = 1e-42
Identities = 86/210 (40%), Positives = 136/210 (64%), Gaps = 2/210 (0%)
Frame = +1
Query: 148 QILXTPGYVGFANLPNQVHXKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIP 327
+++ G+VGF +LP+Q+ K+V+ GF+F LM VGE+G GK+TL+ SLF L E P
Sbjct: 141 RLMQLNGHVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---P 197
Query: 328 DATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERF 507
E +TV+L T ++ E G++++L +V+T G+GD +D + I+ Y++ QFE +
Sbjct: 198 CNHEL--KTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETY 255
Query: 508 LRDESGLNR--RNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCL 681
L++E R + D+RIH C YFISP GHGLK LD+ +++L +VN++PVIAK+D
Sbjct: 256 LQEELKPRRMLQYFNDSRIHACLYFISPTGHGLKALDLVTLRELAKRVNVIPVIAKSDTT 315
Query: 682 TKKEVQRLKSRVMEEIEREGIKIYPLPDCD 771
K E+ R K++++ E++ + I IY P D
Sbjct: 316 CKDELLRFKAKILSELKSQKIDIYTFPTDD 345
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 387
F L+++G+SG+GKS L+ F D Y E I + +T++LD T++++
Sbjct: 12 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 387
F L+++G+SG+GKS L+ F D Y E I + +T++LD T++++
Sbjct: 12 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
>U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical
protein C18B2.5b protein.
Length = 699
Score = 33.5 bits (73), Expect = 0.21
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Frame = +1
Query: 235 TLMVVGESGLGKSTLVNSL--FLTDLYPE---RVIPDATEKTNQTVKLDASTVEIEERGV 399
TL++ G GK++ + S+ +L D+ E R + D E N T L A +
Sbjct: 468 TLLLFGPVNSGKTSAITSMMNYLYDVKKENDFRFVLD--EHVNATTGLTAYV--FNNTVL 523
Query: 400 KLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIVDNRI-HCCFYF 576
+TVVDTPG D + N +++ + I + FE+ L +SG R + + + H
Sbjct: 524 PYNVTVVDTPGVEDKMGN----KTVSRLIKQWFEKELL-KSGSFRLDAISIVLRHDENQL 578
Query: 577 ISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCL 681
PF + L + F L K N++P+I ++ L
Sbjct: 579 GWPFIYELADVKRMFGDDL--KTNVLPIITNSEVL 611
>U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical
protein C18B2.5a protein.
Length = 673
Score = 33.5 bits (73), Expect = 0.21
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Frame = +1
Query: 235 TLMVVGESGLGKSTLVNSL--FLTDLYPE---RVIPDATEKTNQTVKLDASTVEIEERGV 399
TL++ G GK++ + S+ +L D+ E R + D E N T L A +
Sbjct: 442 TLLLFGPVNSGKTSAITSMMNYLYDVKKENDFRFVLD--EHVNATTGLTAYV--FNNTVL 497
Query: 400 KLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIVDNRI-HCCFYF 576
+TVVDTPG D + N +++ + I + FE+ L +SG R + + + H
Sbjct: 498 PYNVTVVDTPGVEDKMGN----KTVSRLIKQWFEKELL-KSGSFRLDAISIVLRHDENQL 552
Query: 577 ISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCL 681
PF + L + F L K N++P+I ++ L
Sbjct: 553 GWPFIYELADVKRMFGDDL--KTNVLPIITNSEVL 585
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 32.3 bits (70), Expect = 0.48
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +1
Query: 229 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLR 408
E+ MVVG +GKS+L+N++ L +R +A + TV++ + V I + K
Sbjct: 115 EYQAMVVGIPNVGKSSLINAIRTHTLGIKRKAVEAGARPGVTVRVQ-NRVRILD---KPP 170
Query: 409 LTVVDTPG 432
+ ++DTPG
Sbjct: 171 VYIIDTPG 178
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 31.5 bits (68), Expect = 0.84
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTV--EIEERGVKL 405
F ++++G+SG+GKS L++ + + E E +++ ++ TV +I + +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFHLESKSTIGVEFATRSISVEGKTVKAQIWDTAGQE 71
Query: 406 RLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIV 546
R + + Y A+ + E ER+L++ +NIV
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHVTYENVERWLKELRDHADQNIV 118
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKT-NQTVKLDASTVEIEERGVKLR 408
F L+++G+SG+GK+ + LY R DA T T+ +D IE +G K++
Sbjct: 10 FKLLLIGDSGVGKTCI--------LY--RFSDDAFNTTFISTIGIDFKIKTIELKGKKIK 59
Query: 409 LTVVDTPG 432
L + DT G
Sbjct: 60 LQIWDTAG 67
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKT-NQTVKLDASTVEIEERGVKLR 408
F L+++G+SG+GK+ + LY R DA T T+ +D IE +G K++
Sbjct: 10 FKLLLIGDSGVGKTCI--------LY--RFSDDAFNTTFISTIGIDFKIKTIELKGKKIK 59
Query: 409 LTVVDTPG 432
L + DT G
Sbjct: 60 LQIWDTAG 67
>Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical
protein F26H9.6 protein.
Length = 208
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 229 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 387
+F L+++GES +GKS+LV + + QTV LD +T++ E
Sbjct: 19 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDATIKFE 71
>U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein.
Length = 70
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 238 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST--VEIEERGVKLR 408
++++G+SG+GK++L+N + DL + V + T+ D T V I++R V L+
Sbjct: 12 VIILGDSGVGKTSLMNQYEIGDLMNQYVNRRFMNQYKATIGADFLTRDVNIDDRTVTLQ 70
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 229 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST 375
E+ L+VVG+ G+GKS L L + + + E P + + V +D T
Sbjct: 3 EYKLVVVGDGGVGKSALTIQL-IQNHFVEEYDPTIEDSYRKQVVIDGET 50
>U50311-4|AAA92309.1| 491|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform a protein.
Length = 491
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 786 FVFVTVAIGQRVYLYAFPFDFFHNP 712
F+F T+A G VY+ +PF+F NP
Sbjct: 344 FLFFTIAFGA-VYIITYPFEFTSNP 367
>U50311-3|AAK68203.1| 589|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform b protein.
Length = 589
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 786 FVFVTVAIGQRVYLYAFPFDFFHNP 712
F+F T+A G VY+ +PF+F NP
Sbjct: 344 FLFFTIAFGA-VYIITYPFEFTSNP 367
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 238 LMVVGESGLGKSTLVNSL--FLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 411
L + G GK +L N + F T + PERV PD E N K+ +T + R V L +
Sbjct: 174 LRIYGARNCGKKSLANRIHHFATSMAPERVDPD--ENGNDYTKM--TTFLLNGREVTLEI 229
Query: 412 TVVDT 426
+ T
Sbjct: 230 LLEST 234
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 229 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST 375
E+ L+VVG+ G+GKS L L + + + E P + + V +D T
Sbjct: 6 EYKLVVVGDGGVGKSALTIQL-IQNHFVEEYDPTIEDSYRKQVVIDGET 53
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 411
F L+++G+SG+GKS+L+ F + + E I T+ +D ++ G +++L
Sbjct: 11 FKLLIIGDSGVGKSSLL-LRFADNTFSENYI--------TTIGVDFKIRTMDINGQRVKL 61
Query: 412 TVVDTPG 432
+ DT G
Sbjct: 62 QIWDTAG 68
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTV--EIEERGVKL 405
F ++++G+SG+GKS L++ + E E +++ ++ TV +I + +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSISVEGKTVKAQIWDTAGQE 71
Query: 406 RLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIV 546
R + + Y A+ + E ER+L++ +NIV
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHVTYENVERWLKELRDHADQNIV 118
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 411
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 412 TVVDTPG 432
+ DT G
Sbjct: 60 QIWDTAG 66
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 411
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 412 TVVDTPG 432
+ DT G
Sbjct: 60 QIWDTAG 66
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 411
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 412 TVVDTPG 432
+ DT G
Sbjct: 60 QIWDTAG 66
>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resistance
protein familyprotein 6 protein.
Length = 1396
Score = 29.1 bits (62), Expect = 4.5
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Frame = +1
Query: 160 TPGYVGFANLPNQVHXKSVKKGFEFTLM------VVGESGLGKSTLVNSLF-LTDLYPER 318
T G + F N+ V K F ++ VVG +G GKSTL+ +F L + R
Sbjct: 1132 TKGEIEFENVSVNYGETKVLKNLSFVVLGGQKIGVVGRTGAGKSTLIKIIFGLKEYCSGR 1191
Query: 319 VIPDATEKTNQTVKLDASTVE-IEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQ 495
V D + + ++ + I + V TV + D D+ + ++ Q +
Sbjct: 1192 VTIDGVDLDHISLNFRRGGMSIIPQEPVIFSGTVRENLDPFDEYDDATIWFALEQC---E 1248
Query: 496 FERFLRDESGLN 531
+R + E GLN
Sbjct: 1249 LKRSITKEKGLN 1260
>U40411-2|AAR25660.2| 413|Caenorhabditis elegans Hypothetical
protein B0403.5 protein.
Length = 413
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 299 VKNKELTRVDLPSPLSPTTIRVNSKPFFTDXLCT 198
V+ +TR+ S SPTT ++ PFF L T
Sbjct: 334 VQPASVTRISFASTASPTTYSTSTTPFFRPVLTT 367
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 238 LMVVGESGLGKSTLVNSLFLTDLY-PERVIPDATEKTNQTVKLDASTVEI 384
++++GESG+GKS+L+ F+ D++ PE+ + ++ +D + V++
Sbjct: 14 ILIIGESGVGKSSLM-LRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKL 62
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 411
F L+++G+SG+GKS+L+ F + + E I T V T++I + VKL++
Sbjct: 11 FKLLIIGDSGVGKSSLL-LRFADNTFSENYI------TTIGVDFKIRTMDINGQRVKLQI 63
>U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical
protein C37C3.3 protein.
Length = 265
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 385 EERGVKLRLT-VVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRD 516
E+R V + + PG+ +AID D R ++ E ++ L D
Sbjct: 183 EQREVAKEIADAISNPGFNNAIDEADLLRELVDLEQEALDKDLLD 227
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 232 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 387
+ + VVG++G GKS+L++ L +T Y + D + TV + VE +
Sbjct: 238 YKIYVVGDTGTGKSSLISQL-ITSEY-KNAFADEIQDYENTVSICIGGVECD 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,200
Number of Sequences: 27780
Number of extensions: 287950
Number of successful extensions: 1102
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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