Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_I01
(903 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 31 0.17
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.52
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.6
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 23 2.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.8
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 31.5 bits (68), Expect = 0.17
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 777 PPPPPPXXKXKKXPPXXPPXXXXPP 851
PPPPPP K PP P PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPP 1906
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.52
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 777 PPPPPPXXKXKKXPPXXPP 833
PPPPPP + PP PP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 765 PXXXPPPPPPXXKXKKXPPXXPPXXXXP 848
P PPPPPP + PP PP P
Sbjct: 5 PPGNPPPPPPPPGFE--PPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 753 PXXXPXXXPPPPPPXXKXKKXPPXXP 830
P P PPPPPP KK P
Sbjct: 16 PGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 726 PPXKXXKXXPXXXPXXXPPPPPPXXKXKKXPPXXPPXXXXPP 851
PP + P PPPPP PP PP PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPP---MSVPPPPSAPPMPAGPP 1728
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 777 PPPPPPXXKXKKXPPXXPP 833
PPPPPP PP PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 777 PPPPPPXXKXKKXPPXXPP 833
PPPPPP PP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 726 PPXKXXKXXPXXXPXXXPPPPPPXXKXKKXPPXXPP 833
PP P P P PPP PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.0 bits (47), Expect(2) = 2.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 777 PPPPPPXXKXKK 812
PPPPPP KK
Sbjct: 1097 PPPPPPAEVEKK 1108
Score = 22.6 bits (46), Expect(2) = 2.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 765 PXXXPPPPPP 794
P PPPPPP
Sbjct: 1091 PSAVPPPPPP 1100
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/41 (29%), Positives = 14/41 (34%)
Frame = +3
Query: 726 PPXKXXKXXPXXXPXXXPPPPPPXXKXKKXPPXXPPXXXXP 848
P + + P PP PPP PP PP P
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 25.8 bits (54), Expect = 8.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 777 PPPPPPXXKXKKXPP 821
PPPPPP + + PP
Sbjct: 312 PPPPPPSRRNRGKPP 326
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/63 (28%), Positives = 18/63 (28%)
Frame = +3
Query: 663 GAPPXXHXKXXPPX*XXXXXXPPXKXXKXXPXXXPXXXPPPPPPXXKXKKXPPXXPPXXX 842
GAPP PP PP K P P PP K P P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPP--VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 843 XPP 851
PP
Sbjct: 1139 APP 1141
Score = 26.6 bits (56), Expect = 4.8
Identities = 19/64 (29%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Frame = +3
Query: 663 GAPPXXHXKXX-PPX*XXXXXXPPXKXXKXXPXXXPXXXPPPPPPXXKXKKXPPXXPPXX 839
GAPP PP PP K P P PP K P PP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVP--KPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214
Query: 840 XXPP 851
PP
Sbjct: 1215 TAPP 1218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,557
Number of Sequences: 5004
Number of extensions: 16142
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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