Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H24
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438    130   2e-30
01_05_0007 - 17017106-17017804,17017936-17018025                       29   3.8  
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762...    29   6.6  
12_01_0078 - 639421-639624,639706-639876,640392-640597,640985-64...    28   8.7  
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59...    28   8.7  

>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
          Length = 617

 Score =  130 bits (313), Expect = 2e-30
 Identities = 63/137 (45%), Positives = 88/137 (64%), Gaps = 1/137 (0%)
 Frame = +3

Query: 450 RSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQY 629
           RSCREG+CGSC+M IDGVNT+AC+  +D + S  T + PLPHMYVV+DLV DLT+FY+QY
Sbjct: 432 RSCREGICGSCSMCIDGVNTVACLRPVDTDTSSATTVTPLPHMYVVRDLVVDLTSFYQQY 491

Query: 630 QSIEPWLQRENEAVKVRRLNCSRTXRTASSWMVSMNVCYVLAVRRVARPT-GGMXNKYLG 806
           +S+EPWL+R+ +  K      +++       +  +  C + A    A P+       +LG
Sbjct: 492 KSVEPWLKRKTK-TKTETTEHAQSPEERKR-LDGLYECILCACCSAACPSYWWNAEAFLG 549

Query: 807 PAVLMQAYXWXIDSRNE 857
           PA L+ AY W  DSR+E
Sbjct: 550 PAALLHAYRWVSDSRDE 566



 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = +2

Query: 266 ATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 445
           A ++     VK F VYRW+PD P ++P+ Q++ VDL  C PMVLD L KIK E D TL F
Sbjct: 371 AAASPAPSTVKEFRVYRWSPDAPSRRPHLQSYHVDLATCGPMVLDVLQKIKAEHDATLAF 430

Query: 446 R 448
           R
Sbjct: 431 R 431


>01_05_0007 - 17017106-17017804,17017936-17018025
          Length = 262

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 481 QEPQTPSRHERSEGQGWVYFVLNLQQSVQY 392
           QEP+    HE S G+ +  FV+N++ S QY
Sbjct: 14  QEPEC--EHEESSGEEYEQFVVNIRNSAQY 41


>02_02_0188 +
           7617838-7620231,7621856-7622071,7622167-7622328,
           7622466-7622516,7622936-7623070,7623161-7623184,
           7623341-7623452,7623776-7623901,7624004-7624053,
           7624339-7624497,7624582-7624677,7624751-7624866,
           7624907-7624984,7624985-7625108,7625193-7625306,
           7625423-7625503,7625616-7625756,7625834-7625848
          Length = 1397

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 308 VYRWNPDEPDKKPYTQNFEVDLDDCA 385
           VYRW  D    KP      VDLDDCA
Sbjct: 308 VYRW--DGTSWKPQADVLHVDLDDCA 331


>12_01_0078 -
           639421-639624,639706-639876,640392-640597,640985-641100,
           641669-641855,642104-642338
          Length = 372

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 559 IFVGLEMF*SIWLMQARVLTPSIFIAQEPQTPSRHERSEGQGWVYFVLNLQQ 404
           IF GLE F     M   +++ S+ +  +PQ P   +  + +  V F+L LQQ
Sbjct: 171 IFGGLEGFGG---MNYAIISDSLIVGSQPQKPEDIDHLKDEEKVAFILCLQQ 219


>04_01_0058 +
           592846-593185,594641-595182,596298-596987,597078-597233,
           597277-597856,598601-598764,598907-599100,599702-599750,
           599777-599806
          Length = 914

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 833 PVGLHEDSRA*VLIXHSTSRTGNSSDSKHIAHIHRDHPT*RGPXRPGAIE 684
           PV L+  +     I    +  GN+ D+ H  HI  D P    P   G +E
Sbjct: 691 PVSLNNTNEP-CSISSQEASAGNTKDTSHTEHIEGDKPIYEDPPLEGKVE 739


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,980,883
Number of Sequences: 37544
Number of extensions: 481622
Number of successful extensions: 1108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)