Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_H24
(884 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47809-2|CAA87780.1| 298|Caenorhabditis elegans Hypothetical pr... 145 3e-35
AB008569-1|BAA23717.1| 297|Caenorhabditis elegans iron-sulfur s... 145 3e-35
S50380-1|AAB24366.1| 161|Caenorhabditis elegans succinate-ubiqu... 141 7e-34
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 29 4.4
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 29 5.8
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 29 5.8
>Z47809-2|CAA87780.1| 298|Caenorhabditis elegans Hypothetical
protein F42A8.2 protein.
Length = 298
Score = 145 bits (352), Expect = 3e-35
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 2/138 (1%)
Frame = +3
Query: 450 RSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQY 629
RSCREG+CGSCAMNI G NTLACI ID + SK TKIYPLPHM+VVKDLVPD+ FY QY
Sbjct: 105 RSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQY 164
Query: 630 QSIEPWLQRENE-AVKVRRLNCSRTXRTASSWMVSMNVCYVLAVRRVARPT-GGMXNKYL 803
SI+PW+Q++ + ++++ S R + + C + A + P+ +KYL
Sbjct: 165 ASIQPWIQKKTPLTLGEKQMHQSVAERDR---LDGLYECILCACCSTSCPSYWWNADKYL 221
Query: 804 GPAVLMQAYXWXIDSRNE 857
GPAVLMQAY W IDSR++
Sbjct: 222 GPAVLMQAYRWVIDSRDD 239
Score = 87.0 bits (206), Expect = 2e-17
Identities = 37/61 (60%), Positives = 45/61 (73%)
Frame = +2
Query: 266 ATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 445
A + R+KTF +YR+NP+ P KP Q F+VDLD C M+LDAL+KIKNEVDPTLTF
Sbjct: 44 AKTKKTGNRIKTFEIYRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTLTF 103
Query: 446 R 448
R
Sbjct: 104 R 104
>AB008569-1|BAA23717.1| 297|Caenorhabditis elegans iron-sulfur
subunit of mitochondrialsuccinate dehydrogenase protein.
Length = 297
Score = 145 bits (352), Expect = 3e-35
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 2/138 (1%)
Frame = +3
Query: 450 RSCREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQY 629
RSCREG+CGSCAMNI G NTLACI ID + SK TKIYPLPHM+VVKDLVPD+ FY QY
Sbjct: 104 RSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQY 163
Query: 630 QSIEPWLQRENE-AVKVRRLNCSRTXRTASSWMVSMNVCYVLAVRRVARPT-GGMXNKYL 803
SI+PW+Q++ + ++++ S R + + C + A + P+ +KYL
Sbjct: 164 ASIQPWIQKKTPLTLGEKQMHQSVAERDR---LDGLYECILCACCSTSCPSYWWNADKYL 220
Query: 804 GPAVLMQAYXWXIDSRNE 857
GPAVLMQAY W IDSR++
Sbjct: 221 GPAVLMQAYRWVIDSRDD 238
Score = 87.0 bits (206), Expect = 2e-17
Identities = 37/61 (60%), Positives = 45/61 (73%)
Frame = +2
Query: 266 ATSASLAKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 445
A + R+KTF +YR+NP+ P KP Q F+VDLD C M+LDAL+KIKNEVDPTLTF
Sbjct: 43 AKTKKTGNRIKTFEIYRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTLTF 102
Query: 446 R 448
R
Sbjct: 103 R 103
>S50380-1|AAB24366.1| 161|Caenorhabditis elegans
succinate-ubiquinone oxidoreductasecomplex II
iron-sulfur subunit protein.
Length = 161
Score = 141 bits (341), Expect = 7e-34
Identities = 71/136 (52%), Positives = 92/136 (67%), Gaps = 2/136 (1%)
Frame = +3
Query: 456 CREGVCGSCAMNIDGVNTLACISHIDQNISKPTKIYPLPHMYVVKDLVPDLTNFYRQYQS 635
CREG+CGSCAMNI G NTLACI ID + SK TKIYPLPHM+VVKDLVPD+ FY QY S
Sbjct: 1 CREGMCGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYAS 60
Query: 636 IEPWLQRENE-AVKVRRLNCSRTXRTASSWMVSMNVCYVLAVRRVARPT-GGMXNKYLGP 809
I+PW+Q++ + ++++ S R + + C + A + P+ +KYLGP
Sbjct: 61 IQPWIQKKTPLTLGEKQMHQSVAERDR---LDGLYECILCACCSTSCPSYWWNADKYLGP 117
Query: 810 AVLMQAYXWXIDSRNE 857
AVLMQAY W IDSR++
Sbjct: 118 AVLMQAYRWVIDSRDD 133
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 645 WLQRENEAVKVRRLNCSRTXRTAS 716
W +NEA K +NCS+T TAS
Sbjct: 2156 WNDLKNEAAKTSGINCSKTLLTAS 2179
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 269 TSASLAKRVKTFAVYRWNPDEPD-KKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 445
T +A + + Y+ NPD+ + Y ++ E+ +D C +LD + + ++ T+
Sbjct: 136 TKIVVASQDEKIRFYQRNPDKSKYRSKYMKSDELRVDQCGWSILDTAISLNGDLIAYGTW 195
Query: 446 RTFVPRGRLWF 478
+ V G+L F
Sbjct: 196 KDAVFVGKLDF 206
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 269 TSASLAKRVKTFAVYRWNPDEPD-KKPYTQNFEVDLDDCAPMVLDALLKIKNEVDPTLTF 445
T +A + + Y+ NPD+ + Y ++ E+ +D C +LD + + ++ T+
Sbjct: 177 TKIVVASQDEKIRFYQRNPDKSKYRSKYMKSDELRVDQCGWSILDTAISLNGDLIAYGTW 236
Query: 446 RTFVPRGRLWF 478
+ V G+L F
Sbjct: 237 KDAVFVGKLDF 247
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,616,073
Number of Sequences: 27780
Number of extensions: 416942
Number of successful extensions: 1140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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