Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H24
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +3

Query: 306 QSIDGTPMSPTRNLIRKISKWI----WTTAHRWYW 398
           + + G P+S    LIR I+ W+    WT A  + W
Sbjct: 156 KGLSGKPLSINGALIRIIAIWLFSLGWTIAPMFGW 190


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +3

Query: 306 QSIDGTPMSPTRNLIRKISKWI----WTTAHRWYW 398
           + + G P+S    LIR I+ W+    WT A  + W
Sbjct: 32  KGLSGKPLSINGALIRIIAIWLFSLGWTIAPMFGW 66


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 700 VLEQLSLLTXTASFSRCSHGSIDW 629
           VL+ L LLT     SRC+ G +++
Sbjct: 5   VLKLLVLLTFLLHPSRCTQGKVNY 28


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 700 VLEQLSLLTXTASFSRCSHGSIDW 629
           VL+ L LLT     SRC+ G +++
Sbjct: 5   VLKLLVLLTFLLHPSRCTQGKVNY 28


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 740 VLCACCP 760
           +LCACCP
Sbjct: 404 ILCACCP 410


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 287 KRVKTFAVYRWNPDEPDKKPYTQNFEVDL 373
           +R KTFA    N +E  +KP  Q    +L
Sbjct: 130 RRKKTFAAREDNDEEEAQKPKEQYIPPEL 158


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 496 TASTLWPASAISIKTFPSRRRFILYLTCTSSKTW 597
           T  TLW   + + +   +   FIL+L C     W
Sbjct: 261 TLMTLWLEPSSTERMIIANLNFILHLFCLLDVQW 294


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 385 TDGIGRFAED*ERSRPNPDLQNVRAERAFV 474
           ++G G   E   R  P PD+  VRA+ + V
Sbjct: 16  SNGTGAVVECQARGNPQPDIIWVRADGSAV 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,474
Number of Sequences: 438
Number of extensions: 5333
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)