Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H23
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   1.5  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   2.0  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -3

Query: 462 TTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPKNAMMKAMPPTIIQATGA 283
           TTP   T TITP V  + I T M  A +T M+       +     +  A   T ++ T  
Sbjct: 108 TTPMVETTTITPMVETTTI-TPMVEAMITLMEETMTTPMEETTTILPMAAMTTPMEETTT 166

Query: 282 TLKLVSDSTV 253
           T  +V  +T+
Sbjct: 167 TTPMVETTTI 176


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 471 IAAT-TPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPK-NAMMKAMPPTII 298
           +A T TP+   +      SFS+ +T      VTS  + S++ P     N+    +PPT  
Sbjct: 30  VATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTS 89

Query: 297 QATGATL 277
             T  T+
Sbjct: 90  MNTTTTV 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,847
Number of Sequences: 5004
Number of extensions: 57617
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)