Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H23
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    64   2e-12
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.8  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 64.1 bits (149), Expect = 2e-12
 Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 12/221 (5%)
 Frame = +2

Query: 131 MGCGEFLVKYVXXXXXXXXXXXXXXXXXXXXXVHLQFADIETVLSETSFRVAPVACMIVX 310
           M CG  ++KY+                     +HLQ   +   + ET      +  +++ 
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQI-ETGLAFPSITLIVLG 59

Query: 311 XXXXXXXXXXXXXXXRESNCMLVTYAIFMLVLMALKLTLGVMVFV------NLDGVVAAI 472
                          RES+CM +T+A F+L ++ +++ + V  F+      N   +    
Sbjct: 60  SIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKY 119

Query: 473 PNWMNKTF--QQDQDTFHVIEHRFSCCGPTGPGSYLSLTLPITCCST---TPCTVINAYA 637
               N  F   + +D    I+    CCG      Y    +P +CC++     C++ N+Y 
Sbjct: 120 QEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCCNSPENNTCSISNSYT 179

Query: 638 -GCTEVLQALFINYXXXXXXXXXXXXXXXXXAVIFALCLAN 757
            GC E L+                        +I ALCLAN
Sbjct: 180 NGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLAN 220


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 265 RDQLQSGAGGLYDCWGHRFHHCILRMLRCHQG 360
           RD  +   GG+Y    H  HH     +  H G
Sbjct: 263 RDSRRKNYGGVYHLDNHHVHHANHHAILGHSG 294


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +1

Query: 322 HHCILRMLRCHQGEQLHACHL-RDLHAGVD 408
           +HC L    CH G  L    L R LH  ++
Sbjct: 127 NHCELHRAACHSGSSLTKSRLMRCLHHDIE 156


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 337 RMLRCHQGEQLHACHL 384
           R LR H GE+ +AC L
Sbjct: 55  RHLRVHTGERPYACEL 70


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 745 QSEDDGXXXNGGDHDGDRAD 686
           +  DDG   N GD    RAD
Sbjct: 194 RDSDDGSDGNDGDESSCRAD 213


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 440 TPLRPRSVSVPSTP 399
           TPL+PR  S+ S+P
Sbjct: 892 TPLQPRFYSISSSP 905


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,143
Number of Sequences: 438
Number of extensions: 4085
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)