Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_H21
(867 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 69 9e-13
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 27 3.5
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 27 3.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.6
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 26 6.0
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 26 6.0
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 26 6.0
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 6.0
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 26 8.0
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 26 8.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 8.0
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 68.9 bits (161), Expect = 9e-13
Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Frame = +1
Query: 148 TENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDSKQLTFMYLAN 327
T + + KL LN +Q+SI ++ W++ H+++ +V+ WL+ L ++ +K+L +YL N
Sbjct: 4 TPDTVSSKLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYLLN 63
Query: 328 DVIQNSK-KKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKI 504
+V+Q S+ KK EY +V S A + + K + + +W +RG++ E +
Sbjct: 64 EVVQQSRVKKISEYIDAVSPYVVNSVAD-AYASVPASIKTKIKYVFDVWCQRGIFSKEIL 122
Query: 505 KDFKDAIAGIE 537
++ E
Sbjct: 123 LSLQERFNNAE 133
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = -1
Query: 522 SIFKVLNFFCIIYTSFFPYLQYSMQGMLCFRFHSS-----FGHMLK*FYKNFPKLLSIFR 358
SIF I+ + F + QYS+ G++ +F +S F L +Y + S+ R
Sbjct: 355 SIFMASMSVIIVVSEVFLHTQYSLVGIILQKFTNSSATSIFVSFLFVYYMRYCTYKSLMR 414
Query: 357 SLFLTVLYYII 325
+ F YY +
Sbjct: 415 TQFAPHYYYAL 425
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 145 FTENALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTW 267
F A RK D Q + S WL+ R H VVK++
Sbjct: 477 FAVKAYRRKADDETDGQYIAKLASEWLVQCRMEHPNVVKSY 517
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 524 IASLKSLIFSASYTPLSSHIFNI 456
+A+L S+ Y+P S HIF I
Sbjct: 491 VANLSSMFLDIKYSPSSEHIFEI 513
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 302 NSHSCILLMM*YKTVRKRDL 361
N++SC++L + KTV+K DL
Sbjct: 212 NTNSCVILDLDLKTVKKEDL 231
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 398 DSTRTSPNSFPYSGPFFLLFCITSLARYMNV 306
D R P S+P + F + F +TS A + NV
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENV 93
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +1
Query: 373 EFGEVLVESFQHMAKTGMES------KTKHSLHRILKIWEERGV--YDAEKIKDFKDAIA 528
E+ E E + H+ G K + ++H IL+ W +RGV + + I
Sbjct: 163 EWDEATQEYYLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDAINMISKDQR 222
Query: 529 GIEAPVTPSK 558
++AP+T +
Sbjct: 223 FLDAPITDDR 232
>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 431 LKQSIPCIEY*RYGKKEVYMMQKKLRTLKMLLPASKHPSLRAKLANVNR----LIQNLRS 598
+++ I ++Y +KEV ++ +L+ LK++ ++PS R NR L NL S
Sbjct: 56 MEKHIYQVKYTEEQEKEVLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLS 115
Query: 599 LPKNI 613
P I
Sbjct: 116 GPGRI 120
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Frame = -2
Query: 539 ASMPAIASLKSLIFSASYTPLSSHIFNIL--CKE--------CFVLDSIPVLAIC*NDST 390
+S+P++ASL + S S +P S+ ++ I C++ C V D + C D++
Sbjct: 108 SSIPSVASLTCSVNSMSVSPQSNFMYAICDHCEQPIHNVRYKCSVCDDYDICESCLTDNS 167
Query: 389 RTSPNSF 369
++ ++F
Sbjct: 168 HSNTHAF 174
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.8 bits (54), Expect = 8.0
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +1
Query: 340 NSKKKGPEYGKEFGEVLVESFQHM--AKTGME-SKTKHSLHRILKIWEERGVYDAEKIKD 510
N +K +G + + V+ F H A+ E S+ K + + K +E+G+ E++
Sbjct: 38 NLYQKLVSFGMDGDDPAVKEFAHTLYARIPREGSRPKENYNARKK--KEQGILQMERLNS 95
Query: 511 FKDAIAGIEAPVTPSKVSKRKS-TDTELKESTKKHK 615
D + ++ TP K K+KS + T +E ++ +
Sbjct: 96 SYDLLIEPQSHETPGKPLKKKSRSKTPKREIARRQR 131
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 157 ALVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLK 285
AL+R LQD ++ ++ L+ +L VK K+LLK
Sbjct: 167 ALLRALQDSRIDREKLEALATFLASASIDEKVYVKNCKKDLLK 209
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +1
Query: 454 RILKIWEERGVYDAEKIKD----FKDAIAGIEAPVTPSKVSKRKSTDTE 588
++ IWE+ + EK++ KDA+A E S + +ST+ E
Sbjct: 124 KLCDIWEKASTFPPEKLESLRSKLKDAMASTEPVSVDSAAAPSQSTNPE 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,913
Number of Sequences: 5004
Number of extensions: 54321
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -