Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_H21
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138... 93 3e-19
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 91 1e-18
04_04_1292 - 32413046-32413807,32413901-32413936,32414037-324141... 88 1e-17
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 48 1e-05
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459... 38 0.008
04_03_0674 + 18565426-18565487,18565591-18565696,18565856-185659... 34 0.13
12_01_0217 + 1647319-1648327,1648462-1648577,1648650-1648817,164... 31 1.6
11_01_0216 + 1693889-1694897,1695034-1695149,1695222-1695389,169... 31 1.6
09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510... 29 3.6
07_03_0753 + 21251216-21251221,21251486-21251557,21251920-212522... 29 4.8
01_05_0040 - 17492625-17492744,17493106-17493411 28 8.4
>11_01_0172 -
1383568-1384440,1385336-1385401,1385470-1385505,
1385604-1385743,1386978-1387134,1387245-1387418,
1387540-1387790,1390296-1390446
Length = 615
Score = 93.1 bits (221), Expect = 3e-19
Identities = 54/135 (40%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Frame = +1
Query: 145 FTENALVRKLQDLNSSQQSIQT------LSLWLIHHRKHHAAVVKTWLKELLKAKDSKQL 306
F+E A V KL LN++ IQ+ LS W I HRK VV TW K+ A K++
Sbjct: 25 FSEQAFVEKLNKLNNTATRIQSILSSAALSNWCIFHRKRARKVVDTWEKQYNSANKDKKV 84
Query: 307 TFMYLANDVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGV 486
+F+YL+ND++QNSK+KG E+ EF VL + G E K + R++ IW+ER V
Sbjct: 85 SFLYLSNDILQNSKRKGGEFVNEFWRVLPGLLKDFYVNGGED-GKKVVGRLIDIWDERKV 143
Query: 487 YDAEKIKDFKDAIAG 531
+ +I+ KD I G
Sbjct: 144 F-GTRIESLKDDILG 157
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 91.1 bits (216), Expect = 1e-18
Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Frame = +1
Query: 145 FTENALVRKLQDLNSSQQSIQT------LSLWLIHHRKHHAAVVKTWLKELLKAKDSKQL 306
F+E A V KL LN++ IQ+ LS W I HRK VV TW K+ A K++
Sbjct: 23 FSEQAFVEKLNKLNNTATRIQSILSSAALSNWCIFHRKRARKVVDTWEKQYNSANKDKKV 82
Query: 307 TFMYLANDVIQNSKKKGPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGV 486
+F+YL+ND++QNSK+KG E+ EF VL + G E K + R++ IW+ER V
Sbjct: 83 SFLYLSNDILQNSKRKGGEFVNEFWRVLPGLLKDFYVNGGED-GKKVVGRLIDIWDERKV 141
Query: 487 YDAEKIKDFKDAIAG 531
+ +I+ K+ I G
Sbjct: 142 F-GTRIESLKNDILG 155
>04_04_1292 -
32413046-32413807,32413901-32413936,32414037-32414179,
32414263-32414419,32414518-32414679,32414860-32415107,
32415589-32415733
Length = 550
Score = 87.8 bits (208), Expect = 1e-17
Identities = 42/130 (32%), Positives = 80/130 (61%)
Frame = +1
Query: 205 QTLSLWLIHHRKHHAAVVKTWLKELLKAKDSKQLTFMYLANDVIQNSKKKGPEYGKEFGE 384
+ LS W I+HRK+ +V+TW K+ + + ++ F+YLAND++QNSK+ G E+ +EF +
Sbjct: 48 RALSHWCIYHRKNAEQIVQTWAKQFHSSGNEQKTPFLYLANDILQNSKRNGTEFVEEFWK 107
Query: 385 VLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKIKDFKDAIAGIEAPVTPSKVS 564
VL + + + + G + + K + R+++IW+ER V+ + KD + G P+ ++
Sbjct: 108 VLPGALKDVTENG-DERGKKVVSRLVEIWQERRVF-GSRAGGIKDVMLG-TVPLPVLDMT 164
Query: 565 KRKSTDTELK 594
K++S + +K
Sbjct: 165 KKRSHGSSIK 174
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 47.6 bits (108), Expect = 1e-05
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Frame = +1
Query: 172 LQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDS-KQLTFMYLANDVIQNSK 348
L +LN +++SI+ W + A+ + + +DS +QL ++L ND++ S
Sbjct: 238 LTNLNGTKESIKGAKTWFMQRSPFAPALAEALKDRVFALEDSERQLHIIFLVNDILFESL 297
Query: 349 KKGPEYGKEFGEVLVESF---QHMAKTGMESKTKHS----LHRILKIWEERGVYDAEKIK 507
++ E L F +A+ ++K L +IL+ W + VYD E I
Sbjct: 298 QRRTNSRDLDNEALAFKFVLGSMLARIYNNPQSKDDNQIRLEKILQFWGSKEVYDQETIA 357
Query: 508 DF-KDAIAGIEAPVTPSKVSKRKST 579
+ +D G+ P+ P VS ST
Sbjct: 358 NLERDMKGGVAYPLPPRHVSPDPST 382
>01_07_0022 -
40543912-40544004,40545060-40545229,40545850-40545971,
40549272-40550909,40553212-40553720
Length = 843
Score = 38.3 bits (85), Expect = 0.008
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Frame = +1
Query: 163 VRKLQDLNSSQQSIQTLSLWLIH------HRKHHAAVVKTWLKELLKAKDSKQ------L 306
+ LQ L+ Q T +W I H + + ++LLK +S+Q +
Sbjct: 704 LHSLQTLHGVQHLFLTSGIWGILNAQARLHNMNAGFSPQILAQKLLKLNNSRQTPRERRV 763
Query: 307 TFMYLANDVIQNSKKKGPEYGKEFGEVL 390
+ +YLAND++QNSKK Y EF V+
Sbjct: 764 SLLYLANDIVQNSKKDSGRYVNEFWRVI 791
>04_03_0674 +
18565426-18565487,18565591-18565696,18565856-18565922,
18566049-18566150,18566202-18566314,18566717-18566815,
18567251-18567318,18568264-18568477,18568929-18568984,
18569213-18569320,18569562-18569745,18569914-18570009
Length = 424
Score = 34.3 bits (75), Expect = 0.13
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 7/151 (4%)
Frame = +1
Query: 187 SSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLKAKDS---KQLTFMYLAN-DVIQNSKKK 354
SSQ S+Q L+L + + A + + L+ LK DS K L ++A V +S +
Sbjct: 115 SSQFSLQHLTLCYLDSIQLDADIAE--LESSLKKIDSQGLKHLEASHIAELSVSTDSCRD 172
Query: 355 GPEYGKEFGEVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKIKDFKDAIAGI 534
++ K++ ++E Q + K + K + +WE + + DFKD +
Sbjct: 173 QIKFDKDYKYEVLELNQQLEKYENDLKLLENQKSAEAMWELESMLSEANVLDFKDNCLRV 232
Query: 535 ---EAPVTPSKVSKRKSTDTELKESTKKHKI 618
EA +TP + K +D + H++
Sbjct: 233 FLKEAVLTPECLMYGKESDCSVNSFVSDHEL 263
>12_01_0217 +
1647319-1648327,1648462-1648577,1648650-1648817,
1648911-1649038,1649121-1649220,1649329-1649433
Length = 541
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 382 EVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKIKD 510
E L +FQ+ K TK L + LK E+G+YDA +IKD
Sbjct: 459 EHLYTAFQYFDKDNSGYITKEELEQALK---EQGLYDANEIKD 498
>11_01_0216 +
1693889-1694897,1695034-1695149,1695222-1695389,
1695482-1695609,1695692-1695791,1696124-1696168
Length = 521
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 382 EVLVESFQHMAKTGMESKTKHSLHRILKIWEERGVYDAEKIKD 510
E L +FQ+ K TK L + LK E+G+YDA +IKD
Sbjct: 459 EHLYTAFQYFDKDNSGYITKEELEQALK---EQGLYDANEIKD 498
>09_04_0708 +
19648511-19648808,19649189-19649280,19650850-19651000,
19651779-19651906,19652099-19652257,19652325-19652507,
19652978-19653178,19653269-19653289
Length = 410
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 160 LVRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVK 261
LV +QDLN++ + I+T S W++ + A+V+
Sbjct: 188 LVAVIQDLNNANEEIRTTSAWVLGKASQNNALVQ 221
>07_03_0753 +
21251216-21251221,21251486-21251557,21251920-21252253,
21252596-21252733,21252811-21253202
Length = 313
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 163 VRKLQDLNSSQQSIQTLSLWLIHHRKHHAAVVKTWLKELLK 285
V K+ D + QS + + WL +H K HA V T EL+K
Sbjct: 55 VGKMPDHDMVIQSARKICRWLYNHSKLHAMVTTTIGGELVK 95
>01_05_0040 - 17492625-17492744,17493106-17493411
Length = 141
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +1
Query: 514 KDAIAG--IEAPVTPSKVSKRKSTDTELKESTKKHKI 618
KD I G I+AP+ P ++KS E+++ +K+H++
Sbjct: 58 KDIIFGTSIDAPLKPPTPPQKKSAPHEVEKDSKEHEV 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,529,606
Number of Sequences: 37544
Number of extensions: 303785
Number of successful extensions: 811
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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