Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H21
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    23   2.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   2.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.4  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 280 LKAKDSKQLTFMYLANDVIQNSKKK 354
           L + DSK L   YL+ DV    K K
Sbjct: 1   LSSSDSKSLLKKYLSKDVFDQLKTK 25


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 280 LKAKDSKQLTFMYLANDVIQNSKKK 354
           L + DSK L   YL+ DV    K K
Sbjct: 17  LSSSDSKSLLKKYLSKDVFDQLKTK 41


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 404 NIWPKLEWN 430
           N+W KLEWN
Sbjct: 73  NLWLKLEWN 81


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 IQTLSLWLIHHRKHHAAVVKTWLKEL 279
           + T+ + + HHR     V+ +W+K L
Sbjct: 273 VLTVLVLIFHHRTPDRYVMPSWIKML 298


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 IQTLSLWLIHHRKHHAAVVKTWLKEL 279
           + T+ + + HHR     V+ +W+K L
Sbjct: 273 VLTVLVLIFHHRTPDRYVMPSWIKML 298


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 IQTLSLWLIHHRKHHAAVVKTWLKEL 279
           + T+ + + HHR     V+ +W+K L
Sbjct: 273 VLTVLVLIFHHRTPDRYVMPSWIKML 298


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 IQTLSLWLIHHRKHHAAVVKTWLKEL 279
           + T+ + + HHR     V+ +W+K L
Sbjct: 273 VLTVLVLIFHHRTPDRYVMPSWIKML 298


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 IQTLSLWLIHHRKHHAAVVKTWLKEL 279
           + T+ + + HHR     V+ +W+K L
Sbjct: 273 VLTVLVLIFHHRTPDRYVMPSWIKML 298


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 IQTLSLWLIHHRKHHAAVVKTWLKEL 279
           + T+ + + HHR     V+ +W+K L
Sbjct: 273 VLTVLVLIFHHRTPDRYVMPSWIKML 298


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 14/58 (24%), Positives = 22/58 (37%)
 Frame = +1

Query: 433 KTKHSLHRILKIWEERGVYDAEKIKDFKDAIAGIEAPVTPSKVSKRKSTDTELKESTK 606
           K  H+ + I+K W     Y    ++        I  P TP+ +    S  T  KE  +
Sbjct: 791 KQSHTPNGIVKTWIAHDRYLPNSLRILLKRFLDITTPPTPNLLRYFASIATNPKEQAQ 848


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,430
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)