Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_H19
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    38   0.002
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   2.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   5.8  

>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = +1

Query: 307 NLPASNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNT 486
           N P       P+   PP DD T  +Q +T    + S+     I+G+ G  +  LR+ TN 
Sbjct: 67  NQPEPTSQVPPISAKPPMDDATYATQQLT-LRALLSTREAGIIIGKAGKNVAELRSTTNV 125

Query: 487 ---YIKTPVRGEEPVFVVTGRKEDVARAKREIL 576
                K      + V  ++G  E+V RA R I+
Sbjct: 126 KAGVTKAVPNVHDRVLTISGPLENVVRAYRFII 158


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 72   TRALHEQTRTLKRSNAPRLLFFYSVP 149
            TRA+ EQ +TLK++    +LF + +P
Sbjct: 1098 TRAIQEQAKTLKKAGMDFMLFSFWLP 1123


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 313 PASNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEHVAEIVGRQ 447
           P S+ L SP+  + PP   T   Q+    VPV   E  A+ + +Q
Sbjct: 357 PVSHHLKSPVRTSFPPASTTASKQDSPSTVPVDKQE-TAKPINKQ 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,685
Number of Sequences: 5004
Number of extensions: 42456
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)